View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_11 (Length: 339)
Name: NF6517_low_11
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 26017681 - 26018000
Alignment:
| Q |
13 |
atgatgatgatggcgattttcctgtttgtctttcgtaattgaaacctttgtttgtagtttaggatatcttaaaggtactaaattagttttgaannnnnnn |
112 |
Q |
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| T |
26017681 |
atgatgatgatagcaatttttccgtttgtcgttggtaattgaaacctttgt----agtttaggatctcatgaaggtacttagttagttttgaaatttatt |
26017776 |
T |
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| Q |
113 |
----agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatggg |
208 |
Q |
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| T |
26017777 |
ttgtagggaggatatgtagatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatg |
26017876 |
T |
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| Q |
209 |
tgatagcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcat |
308 |
Q |
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| T |
26017877 |
tgatagcagaacctgagaccaaagtactcagaattgaacctcatcatgactttttaatcttagcttcagatggattatgggaaaaggtataggacttcat |
26017976 |
T |
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| Q |
309 |
caattaattgcaatgttcatttca |
332 |
Q |
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| T |
26017977 |
caattaattgcaatgttcttttca |
26018000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 113 - 325
Target Start/End: Original strand, 26003035 - 26003247
Alignment:
| Q |
113 |
agggaggatatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgat |
212 |
Q |
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| T |
26003035 |
agggaggatatgtcgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggagatagacacatgaaacaatatgtgat |
26003134 |
T |
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| Q |
213 |
agcagagcctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttcatcaat |
312 |
Q |
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| T |
26003135 |
agcagaacctgagaccaaagtactcagaattgaacctcatcatgacttgttaatcttagcttcagatggattatgggaaaaggtataggacttgaccaat |
26003234 |
T |
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| Q |
313 |
taattgcaatgtt |
325 |
Q |
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| T |
26003235 |
taattgcgatgtt |
26003247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 121 - 297
Target Start/End: Original strand, 30374295 - 30374471
Alignment:
| Q |
121 |
tatgttgatatgtgccgcggtgtttggagaatccaaggatctcttgctgtttcaaggagcattggtgatggacacatgaaacaatgggtgatagcagagc |
220 |
Q |
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| T |
30374295 |
tatgttgatttatgtcgcggtgtttggaggattcaaggatctcttgctgtatcaagaggaattggagaccgacacttgaaacaatgggtgacagcggagc |
30374394 |
T |
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| Q |
221 |
ctgagaccaaagtactcagaattgaacctcaccatgacttgttaatcttagcttcagatggattatgggaaaaggta |
297 |
Q |
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| T |
30374395 |
ccgagactaaagttattagaattgaacctgaacatgacttgttaatattagcttcagatggattatgggataaggta |
30374471 |
T |
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