View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_12 (Length: 290)
Name: NF6517_low_12
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 45891542 - 45891804
Alignment:
| Q |
17 |
caatttactgcagcgaccaatgttaaatgtatcggaataagatccatcttgtgataggaaatgctttaccttaagagcatggtaaggagcacttctttta |
116 |
Q |
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| T |
45891542 |
caatttactgcagcgaccaatgttaaatgtatcggaataagatccatcttgtgataggaaatgctttaccttaagagcatggtaaggagcacttctttta |
45891641 |
T |
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| Q |
117 |
catttacagcagaaaccaatgttatatgtaccgggataagtcttcacgatgccatgtaactgaacagcaacgtttgcatcaaccacgccttgtgttagta |
216 |
Q |
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| T |
45891642 |
catttacagcacaaaccaatgttatatgtaccgggataagtcttcacgatgccatgtaactgaacagcaacgtttgcatcaaccacgccttgtgttagtc |
45891741 |
T |
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| Q |
217 |
gctgtttcacaacattttcttcttcaaggacatcgtcatcatctggcatactattctcttcat |
279 |
Q |
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| T |
45891742 |
gctgtttcacaacgttttcttcttcaaggacatcgtcatcatctggcatactattctcttcat |
45891804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 81 - 262
Target Start/End: Complemental strand, 12982434 - 12982253
Alignment:
| Q |
81 |
tttaccttaagagcatggtaaggagcacttcttttacatttacagcagaaaccaatgttatatgtaccgggataagtcttcacgatgccatgtaactgaa |
180 |
Q |
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| T |
12982434 |
tttaccttaacagcgtggtaaggagcagttcttttacagttacagcagcaaccaaacttaaatgtaccggggtaagtcttcacaatgccttgtacctgaa |
12982335 |
T |
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| Q |
181 |
cagcaacgtttgcatcaaccacgccttgtgttagtagctgtttcacaacattttcttcttcaaggacatcgtcatcatctgg |
262 |
Q |
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| T |
12982334 |
cagcaacattttcatcaacgacaccttgtgtttgttgctgcttcacaacattttcttcttcaaggacgtcttcatcatctgg |
12982253 |
T |
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