View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_15 (Length: 246)
Name: NF6517_low_15
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 54159419 - 54159189
Alignment:
| Q |
1 |
tcattcagtgctttgtttttgggcccaggagtgctggaaaatcttcattgttgaaatcttttattcgatggtattttcattatatgttacctcttagctt |
100 |
Q |
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| T |
54159419 |
tcattcagtgctttgtttttgggcccaggagtgctggaaaatcttcattgttgaaatcttttattcgatggtattttcattatatgttacctcttagctt |
54159320 |
T |
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| Q |
101 |
tctggtacagcggtgctataacttcaattattaaggatcatatcttattgttgttgaattcatattgcaggccatattctgaaatttacaatccaaccaa |
200 |
Q |
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| T |
54159319 |
tctgttacagcggtgctataacttcaattattaaggatcgtatcttattgttgttgaattcatattgcaggccatattctgaaatttacaatccaaccaa |
54159220 |
T |
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| Q |
201 |
cgaggatcattatgctgtgaatgtggttgat |
231 |
Q |
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| T |
54159219 |
cgaggatcattatgctgtgaatgtggttgat |
54159189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 53867900 - 53868125
Alignment:
| Q |
6 |
cagtgctttgtttttgggcccaggagtgctggaaaatcttcattgttgaaatcttttattcgatggtattttcattatatgttacctcttagctttctgg |
105 |
Q |
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| T |
53867900 |
cagtgctttgtttttgggcctaggggggctggaaaatctgcactgttgaaatcttttattcgatggtattttcat--tatgttacgtcgaagctttctgc |
53867997 |
T |
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| Q |
106 |
tacagcggtgctataacttcaattattaaggatcatatcttattgttgttgaattcatattgcaggccatattctgaaatttacaatccaaccaacgagg |
205 |
Q |
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| T |
53867998 |
tacatagatactat-actttaattatcaagtatcacaacttattgttgttaaattcataatgcaggccatatcttgaaatttatgatccaactaacgagg |
53868096 |
T |
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| Q |
206 |
atcattatgctgtgaatgtggttgataat |
234 |
Q |
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| T |
53868097 |
atcgttatgttgtaaatgttgttgataat |
53868125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 36876176 - 36876271
Alignment:
| Q |
137 |
atcatatcttattgttgttgaattcatattgcaggccatattctgaaatttacaatccaaccaacgaggatcattatgctgtgaatgtggttgata |
232 |
Q |
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| T |
36876176 |
atcatgtcttattgttgttgaattcataatgcaggccatattctgaagcttataatccaaccaacgaggatcgttatgctgtaaatgttgttgata |
36876271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 17881404 - 17881296
Alignment:
| Q |
122 |
cttcaattattaaggatcatatcttattgttgttgaattcatattgcaggccatattctgaaatttacaatccaaccaacgaggatcattatgctgtgaa |
221 |
Q |
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| T |
17881404 |
cttcaattattgagcatcat--cttattcttattgaattcatgatgcaggtcatattctgaagcttacaatccaaccaacgaggatcgctatgctgtaaa |
17881307 |
T |
|
| Q |
222 |
tgtggttgata |
232 |
Q |
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||| ||||||| |
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| T |
17881306 |
tgttgttgata |
17881296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 14774098 - 14774007
Alignment:
| Q |
142 |
atcttattgttgttgaa-ttcatattgcaggccatattctgaaatttacaatccaaccaacgaggatcattatgctgtgaatgtggttgata |
232 |
Q |
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||||||||||||||||| |||||| |||||||||||||| || ||||||||||||||| |||||| ||||||||| ||||| ||||||| |
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| T |
14774098 |
atcttattgttgttgaaattcataatgcaggccatattccaaagcttacaatccaaccaataaggatcgttatgctgtaaatgttgttgata |
14774007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 15048610 - 15048545
Alignment:
| Q |
153 |
gttgaattcatattgcaggccatattctgaaatttacaatccaaccaacgaggatcattatgctgt |
218 |
Q |
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| T |
15048610 |
gttgaattcatattgcagaccatattctgaagcttacaatgaaaccaacgaggatcgttttgctgt |
15048545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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