View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_17 (Length: 239)
Name: NF6517_low_17
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_17 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 16530588 - 16530821
Alignment:
| Q |
18 |
cttactagcagataaaacaatcatccaaataatcacaagatttattatggataacccttgattaagctctttagtttgttccactttacaaccaggacaa |
117 |
Q |
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| T |
16530588 |
cttactagcagataaaacaatcatccaaataatcacaagatttatcatggatagcccttgattaagctctttagtttgttccactttacaaccaggacaa |
16530687 |
T |
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| Q |
118 |
tcctcatagtattgcttcttctccaacaatggctgctctttctccatgtttctaacagaattccact---------------tttttctatatgacttaa |
202 |
Q |
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| T |
16530688 |
tcctcatagtattgcttcttctccaacaatg---gctctttctccatgtttctaacagaatttcacttcttccttttttttcttcttctatatgacttaa |
16530784 |
T |
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| Q |
203 |
caattcacatgtaacatgaagcaatatcttatattaa |
239 |
Q |
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| T |
16530785 |
caattcacatgtaacatgaagcaatatcttatattaa |
16530821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 16590563 - 16590696
Alignment:
| Q |
18 |
cttactagcagataaaacaatcatccaaataatcacaagatttattatggataacccttgattaagctctttagtttgttccactttacaaccaggacaa |
117 |
Q |
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|||||| || |||||||| | |||||| ||||||| ||| ||||||||||||| |||| ||||||||| || |||||| || || |||||||||||| |
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| T |
16590563 |
cttacttgctgataaaaccaccatccatataatcaaaagctttattatggatactccttcattaagctcattttcttgttcaaccttgcaaccaggacaa |
16590662 |
T |
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| Q |
118 |
tcctcatagtattgcttcttctccaacaatggct |
151 |
Q |
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| T |
16590663 |
tcttcatagtattgcttcttctccaacaatggct |
16590696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 16522352 - 16522474
Alignment:
| Q |
29 |
ataaaacaatcatccaaataatcacaagatttattatggataacccttgattaagctctttagtttgttccactttacaaccaggacaatcctcatagta |
128 |
Q |
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| T |
16522352 |
ataacacaaccatccatatgaccaaaagatttgtaatggatacccccttgttaagctctttggcttgttcaaccttacaaccaggacaatccttatagta |
16522451 |
T |
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| Q |
129 |
ttgcttcttctccaacaatggct |
151 |
Q |
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| T |
16522452 |
ttgcttcttctccaacaatggct |
16522474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1194 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 1306 - 1470
Alignment:
| Q |
18 |
cttactagcagataaaacaatcatccaaataatcacaagatttattatggataacccttgattaagctctttagtttgttccactttacaaccaggacaa |
117 |
Q |
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||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1306 |
cttaccagcagataacacaaccatccaaataatcacaagatttattatggatagcccttgattaagctctttagtttgttccactttacaaccaggacaa |
1405 |
T |
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| Q |
118 |
tcctcatagtattgcttcttctccaacaatggctgctctttctccatgtttctaacagaattccactt |
185 |
Q |
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| T |
1406 |
tcttcatagtattgcttcttctccaacaatg---gctctttctccatgtttctaacagaattccactt |
1470 |
T |
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