View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_19 (Length: 231)
Name: NF6517_low_19
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 30634891 - 30635102
Alignment:
| Q |
1 |
agcgtggcagagtttcttcgggtcgcattgaacaggtacggggaagtctcgggttcgggtaatgcaaatgggtgaggtgcatggggtgggggtgtaagaa |
100 |
Q |
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| T |
30634891 |
agcgtggcagagtttcttcgggtcgcattgaacaggtacggggaagtcttgggttcgggtaatgcaaatgggtgaggtgcatggggtgggggtgtaagaa |
30634990 |
T |
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| Q |
101 |
gaagaaagtagagggttgaaaatggagtttaaatttggaagttttttgcaatgaagccatgagagttcactccctgtgtcgaggaccatggtaacattct |
200 |
Q |
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| T |
30634991 |
gaagaaagtagagggttgaaaatggagtttaaatttggaagttttttgcaatgaagccatgagagttcactccctgtgtcgaggaccatggtaacattct |
30635090 |
T |
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| Q |
201 |
gtgggggtgagc |
212 |
Q |
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| T |
30635091 |
gtgggggtgagc |
30635102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 34380785 - 34380915
Alignment:
| Q |
74 |
gaggtgcatggggtgggggtgtaagaagaagaaagtagagggttgaaaatggagtttaaatttggaagttttttgcaatgaagccatgagagttcactcc |
173 |
Q |
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||||||||||| ||||||||||| |||||||||| || |||||||||||| |||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
34380785 |
gaggtgcatggagtgggggtgtatgaagaagaaacaagtgggttgaaaatgaagtttaggttagggagttttttgcaatgaagccatgagagttcactcc |
34380884 |
T |
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| Q |
174 |
ctgtgtcgaggaccatggtaacattctgtgg |
204 |
Q |
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| T |
34380885 |
ctgtgtcgaggaccatggtaactctctgtgg |
34380915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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