View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_20 (Length: 227)
Name: NF6517_low_20
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 48844027 - 48844139
Alignment:
| Q |
116 |
atccaacctaaaaaatcaactgatcggatgggtcaccctcaaaattgaccgatttaaatttcatgaattaag-aaaagttcatgagttttttaccctaat |
214 |
Q |
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| T |
48844027 |
atccaacctaaaaaatcaactgatcagatgggtcaccctcaaaattgaccgatttaaatttcatgaattaagcaaaagttcatgagttttttaccctaat |
48844126 |
T |
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| Q |
215 |
atttgttaaagaa |
227 |
Q |
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| T |
48844127 |
atttgttaaagaa |
48844139 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 48843505 - 48843579
Alignment:
| Q |
46 |
aaaatggcccaggcctaaactggctggacaagttgatgcaattttttatcctatataattaaggagctcaatcca |
120 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48843505 |
aaaatggcccaagcctaaactggccggacaagttgatgcaattttttatcctatataattaaggagctcaatcca |
48843579 |
T |
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