View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_3 (Length: 567)
Name: NF6517_low_3
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 303 - 552
Target Start/End: Complemental strand, 2103039 - 2102790
Alignment:
| Q |
303 |
catgggtttgtcaaaatcagatatcagatcttttattcaagagtagaactagtacctcatatttcaaattatacaagttttgcctattaaagcatatgga |
402 |
Q |
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| T |
2103039 |
catgggtttgtcaaaatcacaaatcagatcttttattcaagagtagaactagtacctcatatttcaaattatacaagttttgcctattaaagcatatgga |
2102940 |
T |
|
| Q |
403 |
tcacatgagagagaggcatgcgaattaaaaaggcatttgaaaaattatgatcatacacaattctcaaatgttggtataattgttttcaagtttcaacctc |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2102939 |
tcacatgagagagaggcatgcgaattaaaaaggcatttgaaaaaatatgatcatacacaattctcaaatgttggtctaattgttttcaagtttcaacctc |
2102840 |
T |
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| Q |
503 |
gacctttttagttttcccgagcaaagtacaatcaagagaggcaacaattt |
552 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
2102839 |
gacctttttagttttccagagcaaaacacaatcaagagaggcaacaattt |
2102790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 2103330 - 2103047
Alignment:
| Q |
18 |
aaaaatataggatgcattaaaacttgtgttccccttccaaatacaaatatgaaaataaattgtaaacaatatt----------------------gcaac |
95 |
Q |
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| T |
2103330 |
aaaaatatagaatgcattaaaacttgtgttccccttccaaatacaaatatgaaaataaattgtaaacaatatttcttaatgacagtatatccattgcaac |
2103231 |
T |
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| Q |
96 |
caaacacaagtgaaagaagnnnnnnnaaagcaactttggctgtaagtcattgctatttcatctaccaggaaatcaaagaattgaaacctataagaactca |
195 |
Q |
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| T |
2103230 |
caaacacaagtgaaagatgtttttttaaagcaactttggctgtaagtcattgctatttcatctactaggaaatcaaagaattgaaaccaataagaactca |
2103131 |
T |
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| Q |
196 |
gaaaagtcttgtgaagtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat |
279 |
Q |
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| T |
2103130 |
gaaaagtcttgtgaagtctaacctccaagatttttgccacgatttgcttgagcatcagctgcagagttagaacccttcaacaat |
2103047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 88 - 279
Target Start/End: Original strand, 39182404 - 39182592
Alignment:
| Q |
88 |
attgcaaccaaacacaagtgaaagaagnnnnnnnaaagcaactttggctgtaagtcattgctatttcatctaccaggaaatcaaagaattgaaacctata |
187 |
Q |
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||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |
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| T |
39182404 |
attgcaaccaaacacaagtgaaagatgtttgtttaaagcagctttggctgtaagtc-ttgctatttcatctactagaaaatcaaagaattgaaacctata |
39182502 |
T |
|
| Q |
188 |
agaactcagaaaagtcttgtgaagtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat |
279 |
Q |
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| T |
39182503 |
agaactca--aaagtcttgtgaagtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat |
39182592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 329 - 472
Target Start/End: Original strand, 39182631 - 39182780
Alignment:
| Q |
329 |
gatcttttattcaagagtagaactagtacctcatatttcaaattatacaagttttgcctattaaagcatatggatcacatga------gagagaggcatg |
422 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| || | ||| ||||||||||| |
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| T |
39182631 |
gatcttttattcaagagtagaactagtacttcatatttcaaattatacaagtttttcctattaaagcatatgaatagcgtgacttatgtagagaggcatg |
39182730 |
T |
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| Q |
423 |
cgaattaaaaaggcatttgaaaaattatgatcatacacaattctcaaatg |
472 |
Q |
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| T |
39182731 |
cgaattaaaaaggcatttgaaaaagtatgatcataaacgattctcaaatg |
39182780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 39182366 - 39182399
Alignment:
| Q |
13 |
aaaataaaaatataggatgcattaaaacttgtgt |
46 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
39182366 |
aaaaaaaaaatataggatgcattaaaacttgtgt |
39182399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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