View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6517_low_8 (Length: 436)
Name: NF6517_low_8
Description: NF6517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6517_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 420
Target Start/End: Complemental strand, 26017679 - 26017274
Alignment:
| Q |
15 |
atcatcatcacttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatg |
114 |
Q |
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||||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||| ||| |
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| T |
26017679 |
atcataatcaattacctgagtttcaattcgttctttttcgtctttccttgaaggtttgtgatccgacgttaaggcctcagcaacacctcctctactgatg |
26017580 |
T |
|
| Q |
115 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
26017579 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacacagcaagagccaccattaagatcttcttttaagaaat |
26017480 |
T |
|
| Q |
215 |
ctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26017479 |
ctgaatctgttttgaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttctgtgc |
26017380 |
T |
|
| Q |
315 |
agcaaattctgaagcttttgtacctccatgtccatcaaatatgccnnnnnnngcctgtaccaatcacaaacaaaaatcttagactatatattggtccttg |
414 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017379 |
cgcgaattccgaagcttttgtacctccatgtccatcaaatatgccaaaaaatgcctgtaccaatcacaaacaaaaatcttagactatatattggtcctta |
26017280 |
T |
|
| Q |
415 |
cacatg |
420 |
Q |
| |
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|||||| |
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| T |
26017279 |
cacatg |
26017274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 26 - 359
Target Start/End: Complemental strand, 26002856 - 26002523
Alignment:
| Q |
26 |
ttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgaca |
125 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| || |||||||| ||||| |
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| T |
26002856 |
ttacctgagtctcaatccgttctttttcgtctttcctcgaaggtttgtgatctgatgttaaggcttcagcagcacctccatggctgatgacagcacgaca |
26002757 |
T |
|
| Q |
126 |
atcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgtt |
225 |
Q |
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||| || |||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
26002756 |
atcaccggcattggacataacaaggttgccatttctaattaatgctgttacacagcaagaaccaccattaagatcttcttttaagaaatctgaatctgtt |
26002657 |
T |
|
| Q |
226 |
ttgaggtaaccatgcttcactgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctg |
325 |
Q |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| | |
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| T |
26002656 |
ttgaggtaaccatgtttcactgcttcctcaatatcactctcatctcttctgattacttcttctaacacattcttttccaagttctgtgccgcgaattccg |
26002557 |
T |
|
| Q |
326 |
aagcttttgtacctccatgtccatcaaatatgcc |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
26002556 |
aagcttttgtacctccatgtccatcaaatatgcc |
26002523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 46 - 355
Target Start/End: Complemental strand, 30374166 - 30373857
Alignment:
| Q |
46 |
tccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaa |
145 |
Q |
| |
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||||||||||||| ||| ||||| |||||||||||||| |||||||||| ||||||||||| || ||||| || ||||| || ||||| ||||||| |
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| T |
30374166 |
tccttttcgtcttcccttgaaggacggtgatcagatgttagtgcctcagcaacccctcctctactaataacagcacggcaatcaccagcattagacacaa |
30374067 |
T |
|
| Q |
146 |
caaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgttttgaggtaaccatgcttcac |
245 |
Q |
| |
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| | ||||||||||||||| |||||||| || || ||||| ||||||| ||||| | ||| | ||| || ||||| || ||||||||||| ||||||| |
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| T |
30374066 |
ctaagttaccattcctaatgaatgctgtcacacaacaagaaccaccatgtagatcttttttcatgaactcagaatcggtattgaggtaaccgcgcttcac |
30373967 |
T |
|
| Q |
246 |
tgcttcctcaatatcactttcatctcttctgattacttcctctaacacattcttttccaagttacgtgcagcaaattctgaagcttttgtacctccatgt |
345 |
Q |
| |
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||| ||||||| |||| || || || |||| ||||| || || | |||||||| ||||| ||| |||||||| | ||||| | |||||||||| |
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| T |
30373966 |
tgcctcctcaacatcatctttgtcgctcatgataacttcgtccaagatgttcttttctaagttgtttgccgcaaattcagcggctttggcacctccatgt |
30373867 |
T |
|
| Q |
346 |
ccatcaaata |
355 |
Q |
| |
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|||||||||| |
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| T |
30373866 |
ccatcaaata |
30373857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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