View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_high_1 (Length: 937)

Name: NF6518_high_1
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_high_1
NF6518_high_1
[»] chr7 (1 HSPs)
chr7 (1-934)||(28266849-28267781)


Alignment Details
Target: chr7 (Bit Score: 859; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 1 - 934
Target Start/End: Original strand, 28266849 - 28267781
Alignment:
Q  1 gaccggaagtggtaaaacagtactctttgagctttgcattttgaggcttctctccaggtccatatcatctgagggaagattcatacatgtgaagggatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28266849 gaccggaagtggtaaaacagtactctttgagctttgcattttgaggcttctctccaggtccatatcatctgagggaagattcatacatgtgaagggatct 28266948  T
Q  101 cttaaaacagtaagtaatttctcacaaaattccggctctgaaaacttttctattagtaatatttctctgtagtagtattgatttgtgttcaagaaagata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28266949 cttaaaacagtaagtaatttctcacaaaattccggctctgaaa-cttttctattagtaatatttctctgtagtagtattgatttgtgttcaagaaaggta 28267047  T
Q  201 aaactggtagacgggttctctttcttttagtgtcagtggggtaaacccagtacttttttgccacaaagaagactgatattgtattggtgcataaaaaaca 300  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  28267048 aaactggtagacaggttctctttcttttagtgtcagtggtgtaaacccagtacttttt-gccataaagaagactgatattgtattggtgcataaaaaaca 28267146  T
Q  301 gtctacgcttttgtatggtgaatcactgaataatttgaagcttacaacttgaaatctattttcattatcatgtcttgttaactaattattggtacggtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28267147 gtctacgcttttgtatggtgaatcactgaataatttgaagcttacaacttgaaatctattttcattatcatgtcttgttaactaattattggtacggtta 28267246  T
Q  401 tctttttacttggtgtcaagatctatattgccccatctaaggctttagttcaggagaaggtccgtgattggaatcagaaatttggaccatgggggatttg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28267247 tctttttacttggtgtcaagatctatattgccccatctaaggctttagttcaggagaaggtccgtgattggaatcagaaatttggaccatgggggatttg 28267346  T
Q  501 ttgcctggagctgacaggtgacaatgaatcttacactccaagaaatataaatgaagcagatatcattctaaccactccagaggtcagtattcaaatgaga 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28267347 ttgcctggagctgacaggtgacaatgaatcttacactccaagaaatataaatgaagcagatatcattctaaccactccagaggtcagtattcaaatgaga 28267446  T
Q  601 gttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttc-nnnnnnnncctttgaaatattaaatggacatagatttcaaag 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  28267447 gttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttctttttttttcctttgaaatattaaatggacatagatttcaaag 28267546  T
Q  700 taatcataaattatgatgtttatgcacgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacacacacactgactgattt 799  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28267547 caatcataaattatgatgtttatgcatgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacacacacactgactgattt 28267646  T
Q  800 gttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtggtttgagttttttcagt 899  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28267647 gttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtggtttgagttttttcagt 28267746  T
Q  900 gacatagcacttctactaattgatgatgtccatct 934  Q
    |||||||||||||||||||||||||| ||||||||    
T  28267747 gacatagcacttctactaattgatgaagtccatct 28267781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University