View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_15 (Length: 427)
Name: NF6518_high_15
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 49 - 417
Target Start/End: Original strand, 33778974 - 33779341
Alignment:
| Q |
49 |
aagttaatgatttgtcttataaattcctcgaaggaaatgaatatgcctgcctcaatcaagcacagaaaactaaaaggtgagacaggtttcttacttgaaa |
148 |
Q |
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| T |
33778974 |
aagttattgatttgtcttataaattcctcgaaggaaatgaatatgcctgcctcaatcaagcacagaaaaccaaaaggtgagacaggtttcttacttgaaa |
33779073 |
T |
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| Q |
149 |
acaccgttgctccaacgctcaagcatgtcaccaagattcactacgaatgccctgcaataaaagcaaccagttaaataatgtaagtagcttgggagaagaa |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33779074 |
acaccgttgctccaacgctcaagcatgtcaccaagattcactacgaatgccctgcaataaaagcaaccagttaaataatgtaagtagcttgggagaacaa |
33779173 |
T |
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| Q |
249 |
ggtgnnnnnnnnnnnnnncttaatttgtagcagcatacttgatacaatgcagcttatgcagataattatagcttatgcaacagcatacttgatacagaaa |
348 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33779174 |
ggtgaaaaaactaaaaaacttaatttgtagcagcatacttgatacaatgcagcttatgcagataattatagcttatgcagcagcatacttgatacagaaa |
33779273 |
T |
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| Q |
349 |
attaaannnnnnngaaatatactagcttatgtagataattgtaattttgatgaattgtttggtcctatg |
417 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33779274 |
att-aagttttttgaaatatactagcttatgtagataattgtaattttgatgaattgtttggtcctatg |
33779341 |
T |
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