View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_high_16 (Length: 412)

Name: NF6518_high_16
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_high_16
NF6518_high_16
[»] chr7 (4 HSPs)
chr7 (202-402)||(39416808-39417009)
chr7 (18-155)||(39416635-39416772)
chr7 (203-238)||(399639-399674)
chr7 (213-312)||(33872805-33872904)
[»] chr4 (4 HSPs)
chr4 (219-307)||(30979824-30979912)
chr4 (219-305)||(38020376-38020462)
chr4 (262-307)||(5251896-5251941)
chr4 (219-307)||(2097085-2097173)
[»] chr2 (1 HSPs)
chr2 (241-312)||(26009786-26009857)
[»] chr1 (3 HSPs)
chr1 (222-305)||(32423541-32423624)
chr1 (221-306)||(44751953-44752038)
chr1 (214-255)||(45443448-45443489)
[»] chr3 (1 HSPs)
chr3 (219-307)||(42529436-42529524)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 202 - 402
Target Start/End: Original strand, 39416808 - 39417009
Alignment:
Q  202 gaatggaaattgttagtttgttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416808 gaatggaaattgttagtttgttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagc 39416907  T
Q  302 ta-cccagccccagttttgtcattctctattaggggtgggtgtgagattaaatgagattcaatcaatttactttcaccaatgttgtgatcatttcatata 400  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39416908 taccccagccccagttttgtcattctctattaggggtgggtgtgagattaaatgagattcaatcaatttactttcaccaatgttgtgatcatttcatata 39417007  T
Q  401 tt 402  Q
    ||    
T  39417008 tt 39417009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 39416635 - 39416772
Alignment:
Q  18 aacagaacatcgcaatttcgtcttagttcgtttcggtgattcaagaaatctaattatcatgttgctcaagagactaagctccttccttaaactctcccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39416635 aacagaacatcgcaatttcgtcttagttcgtttcggtgattcaagaaatctaattatcatgttgcccaagagactaagctccttccttaaactctcccct 39416734  T
Q  118 aaacctcacaattctaggtaactattctaaatttctga 155  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39416735 aaacctcacaattctaggtaactattctaaatttctga 39416772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 399674 - 399639
Alignment:
Q  203 aatggaaattgttagtttgttagattaatatttact 238  Q
    |||||||| |||||||||||||||||||||||||||    
T  399674 aatggaaaatgttagtttgttagattaatatttact 399639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 312
Target Start/End: Original strand, 33872805 - 33872904
Alignment:
Q  213 gttagtttgttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccc-tcggttcaaaccagttgagctacccagccc 311  Q
    |||||||||||||||||||||||| |  || |||| ||||||| ||| | ||||| |||||||| |||| |  | |||||||||||||| |||||| |||    
T  33872805 gttagtttgttagattaatatttagtcctttgttc-ggtttgaacccaaaacctccaactccttttccctttagctcaaaccagttgagttacccaaccc 33872903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 30979912 - 30979824
Alignment:
Q  219 ttgttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagctaccca 307  Q
    ||||||||||| | ||| ||  ||||| ||||||||| ||| ||||||| |||||||| |||||  | |||||||||||||||||||||    
T  30979912 ttgttagattagttttttctccttcgtccgggtttgagcccaagacctccaactccttatcccttagctcaaaccagttgagctaccca 30979824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 38020462 - 38020376
Alignment:
Q  219 ttgttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagctacc 305  Q
    ||||||||||||||||||||  ||||| ||||||||| ||   |||||| ||||||||  ||||  | |||||||||||||||||||    
T  38020462 ttgttagattaatatttactccttcgtccgggtttgaaccttggacctccaactccttaacccttagctcaaaccagttgagctacc 38020376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Original strand, 5251896 - 5251941
Alignment:
Q  262 gacctcgaactccttgtccctcggttcaaaccagttgagctaccca 307  Q
    |||||| |||||||| ||||| || |||||||||||||||||||||    
T  5251896 gacctccaactccttttcccttggctcaaaccagttgagctaccca 5251941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 2097173 - 2097085
Alignment:
Q  219 ttgttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagctaccca 307  Q
    ||||||||||||||||||||   | || ||||||||| |||  |||||| ||||||||  ||||  | |||||| ||||||||||||||    
T  2097173 ttgttagattaatatttactcccttgtccgggtttgaacccaggacctccaactccttaacccttagctcaaactagttgagctaccca 2097085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 26009857 - 26009786
Alignment:
Q  241 ttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagctacccagcccc 312  Q
    ||||| ||||||||| |||  |||||| ||||| || ||||| || ||||||||||||||||||||| ||||    
T  26009857 ttcgtccgggtttgaacccaggacctccaactctttatcccttggctcaaaccagttgagctacccaacccc 26009786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 32423541 - 32423624
Alignment:
Q  222 ttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagctacc 305  Q
    |||||||||||||||||  || || ||||||||| ||| ||| ||| |||| ||| |||||  ||||||||||| |||||||||    
T  32423541 ttagattaatatttactcctttgtccgggtttgaacccaagaactccaacttcttatcccttagttcaaaccagctgagctacc 32423624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 306
Target Start/End: Original strand, 44751953 - 44752038
Alignment:
Q  221 gttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagctaccc 306  Q
    ||||||||||||||||||  || || ||||||||| |||   ||||| ||| |||| |||||  | ||||||||||||||||||||    
T  44751953 gttagattaatatttactcatttgtccgggtttgaacccagaacctccaaccccttatcccttagctcaaaccagttgagctaccc 44752038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 45443448 - 45443489
Alignment:
Q  214 ttagtttgttagattaatatttacttgttcgttcgggtttga 255  Q
    |||||||||||||||||||||||||  ||||| |||||||||    
T  45443448 ttagtttgttagattaatatttactccttcgtccgggtttga 45443489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 42529524 - 42529436
Alignment:
Q  219 ttgttagattaatatttacttgttcgttcgggtttgatcccgagacctcgaactccttgtccctcggttcaaaccagttgagctaccca 307  Q
    ||||||||||||||||||||  ||||||   |||||| | |  |||||| |||||||| |||||  | ||||||||| |||||||||||    
T  42529524 ttgttagattaatatttactctttcgtttaagtttgaactcatgacctccaactccttatcccttagctcaaaccagctgagctaccca 42529436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University