View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_19 (Length: 402)
Name: NF6518_high_19
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 186 - 296
Target Start/End: Complemental strand, 20308170 - 20308060
Alignment:
| Q |
186 |
aatattgatcttgaatactaaatcaaatgtgtggttgtggtacgttttcttagacagtgcgacggagcggtggttttggccccattgaagaagaggatga |
285 |
Q |
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| T |
20308170 |
aatattgatcttgaatactaaatcaaatgtgtggttgcggtacgttttcttagacggtgcgacggagcggtggttttggccccattgaagaagaggatga |
20308071 |
T |
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| Q |
286 |
tcctggaaaag |
296 |
Q |
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| T |
20308070 |
tactggaaaag |
20308060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 186 - 296
Target Start/End: Complemental strand, 21094803 - 21094693
Alignment:
| Q |
186 |
aatattgatcttgaatactaaatcaaatgtgtggttgtggtacgttttcttagacagtgcgacggagcggtggttttggccccattgaagaagaggatga |
285 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21094803 |
aatattgatcttgaatactaaatcaaatgtgtggttgcggtacgttttcttagacggtgcgacggagcggtggttttggccccattgaagaagaggatga |
21094704 |
T |
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| Q |
286 |
tcctggaaaag |
296 |
Q |
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| T |
21094703 |
tactggaaaag |
21094693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 20308292 - 20308166
Alignment:
| Q |
3 |
atttaagtattcataactctggttccctcaaacacaacaaattagagagaagaagtttgtggtagtcgattgaagagaagatacaacaatcaatcttcac |
102 |
Q |
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| T |
20308292 |
atttaagtattcatagctttggttccctcaaacacaacaaattggagagaag---tttgtggtagtcgattgaagaggagatccaacaatcaatcttcac |
20308196 |
T |
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| Q |
103 |
ctacacatctcaaattagaatatataatat |
132 |
Q |
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| T |
20308195 |
ttacacatctcaaattagaatatataatat |
20308166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 21094925 - 21094799
Alignment:
| Q |
3 |
atttaagtattcataactctggttccctcaaacacaacaaattagagagaagaagtttgtggtagtcgattgaagagaagatacaacaatcaatcttcac |
102 |
Q |
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||||||||||||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
21094925 |
atttaagtattcatagctttggttccctcaaacacaacaaattggagagaag---tttgtggtagtcgattgaagaggagatccaacaatcaatcttcac |
21094829 |
T |
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| Q |
103 |
ctacacatctcaaattagaatatataatat |
132 |
Q |
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| T |
21094828 |
ttacacatctcaaattagaatatataatat |
21094799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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