View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_20 (Length: 398)
Name: NF6518_high_20
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 4659679 - 4659291
Alignment:
| Q |
1 |
ataacattgttattatttttaattattgtggcataatttattcatagactttgtcaagtctttttctccccgtggtatcccactattgcatgttatttat |
100 |
Q |
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| T |
4659679 |
ataacattattattatttttaattattgtggcataatttattcatagactttgtcaagtctttttctccccgtggtatcccactattgcatgttatttat |
4659580 |
T |
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| Q |
101 |
tatacactaggtgacttctagcaagtcttcatctattatgtggattaaaaatggctggttnnnnnnnttaaatttagtcctatattcgtaggacctaatt |
200 |
Q |
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| T |
4659579 |
---acactaggtgacttctagcaagtcttcatctattatgtggattaaaaatggctggttaaaaaaattaaatttagtcctatattcgtaggacctaatt |
4659483 |
T |
|
| Q |
201 |
atatattttttctataaatacatcaacttttatattttcttcttccgtgcagaaaagaattaaaaatcttatctacatatgttttctcttataaattata |
300 |
Q |
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| T |
4659482 |
atatattttttctataaatacatcaacttttatattttcttcttccgtacagaaaagaattaaaaatcttatctacatatgttttctcttataaattata |
4659383 |
T |
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| Q |
301 |
gttctcgattttcaaccatagactctctaatttaacaaaaatctgtgtgacaactgccatcatgtccgttttttatattcattgggcctatg |
392 |
Q |
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| T |
4659382 |
gttctcgattttcaaccatagactctctgatttaacaaaaatttgtgtgacaactgccatcatgtccgttttttatattcattgggcctatg |
4659291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 4649622 - 4649541
Alignment:
| Q |
16 |
tttttaattattgtggcataatttattcatagactttgtcaagtctttttctccccgtggtatcccactattgcatgttatt |
97 |
Q |
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| T |
4649622 |
tttttatttattatggcattatttattcaaagacttcataaagtcttcgtctcctcgttgtatcccactattacatgttatt |
4649541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 4640755 - 4640672
Alignment:
| Q |
14 |
tatttttaatt-attgtggcataatttattcatagactttgtcaagtctttttctccccgtggtatcccactattgcatgttatt |
97 |
Q |
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| T |
4640755 |
tatttttaatttatcgtggcattatttattcaaagacttcatcaagtcttcgtctccgcgttg-atcccactattgcatgttatt |
4640672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 4632875 - 4632832
Alignment:
| Q |
54 |
tcaagtctttttctccccgtggtatcccactattgcatgttatt |
97 |
Q |
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| T |
4632875 |
tcaagtcttcgtctcctcgtggtatcccactattgcatgttatt |
4632832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 4670313 - 4670259
Alignment:
| Q |
29 |
tggcataatttattcatagactttgtcaagtctttttctccccgtggtatcccac |
83 |
Q |
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| T |
4670313 |
tggcattatttattcaaagacttcgtaaagtcttcgtctccccgtggtatcccac |
4670259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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