View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_27 (Length: 359)
Name: NF6518_high_27
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_27 |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 145 - 359
Target Start/End: Complemental strand, 4234556 - 4234343
Alignment:
| Q |
145 |
ttaatccaattattccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccttatcaggcatagtcaccactctcattaggcccttttc |
244 |
Q |
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| T |
4234556 |
ttaatacaatttttccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccc-atcaggcatagtcaccactctcattaggcctttttc |
4234458 |
T |
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| Q |
245 |
ccaaagtcttgcttgtgggagtatccaccgagtcattagcattgatgtcatctttggtcgaacaaactcctgcaacaatatcctataaattcaataaaat |
344 |
Q |
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| T |
4234457 |
ccaaagtcttgcttgtgggagtatccaccgagtcattagcattgatgtcatctttggtcgaacaaactccttcaacaatatcctataaatacaataaaat |
4234358 |
T |
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| Q |
345 |
atcaaatgattaata |
359 |
Q |
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| T |
4234357 |
atcaaatgattaata |
4234343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 4234693 - 4234624
Alignment:
| Q |
10 |
aagaaaatggccacaaaaaataatgtttcacattgcaataaagcatagtaaaactgagttcaatacgaca |
79 |
Q |
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| T |
4234693 |
aagaaaatggtcacaaaaaataatgtttcacatcgcaataaagcatagtaaaactcagttcaatacgaca |
4234624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 145 - 359
Target Start/End: Original strand, 36513282 - 36513500
Alignment:
| Q |
145 |
ttaatccaattattccatacgggcaagcttctgaattttatttgttgcagacaaagcaccccttatcaggcatagtcaccactctcattaggcccttttc |
244 |
Q |
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| T |
36513282 |
ttaatccaatttttccatactggcaagcttctgaattttatttgttgcagacaaaccaccccc-atcag-catagtcaccactctcattaggcctttttc |
36513379 |
T |
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| Q |
245 |
ccaaagtcttgcttgtgggagt------atccaccgagtcattagcattgatgtcatctttggtcgaacaaactcctgcaacaatatcctataaattcaa |
338 |
Q |
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| T |
36513380 |
ccaaagtcttgcttgtgggagtatgagtatccaccgagtcattagcattgatgtcatctttggtcgaacaaactccttcaacaatatcctataaatacaa |
36513479 |
T |
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| Q |
339 |
taaaatatcaaatgattaata |
359 |
Q |
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| T |
36513480 |
taaaatatcaaatgattaata |
36513500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 36513123 - 36513163
Alignment:
| Q |
26 |
aaaataatgtttcacattgcaataaagcatagtaaaactga |
66 |
Q |
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| T |
36513123 |
aaaataatgtttcacatcgcaataaagcatagtaaaactga |
36513163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 36513084 - 36513116
Alignment:
| Q |
10 |
aagaaaatggccacaaaaaataatgtttcacat |
42 |
Q |
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| T |
36513084 |
aagaaaatggccacaacaaataatgtttcacat |
36513116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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