View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_29 (Length: 340)
Name: NF6518_high_29
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 67 - 325
Target Start/End: Original strand, 48408729 - 48408987
Alignment:
| Q |
67 |
acattacatagtt-gggattactagataacaaactgacattaagatacaagattaccaaacttgctaatgggaacaatagaagatgtaatggtgtcaaca |
165 |
Q |
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| T |
48408729 |
acattacatagtttgggattactagataacaaactgacattaagatacaagattaccaaacttgctaatgggaacaatagaagatgtaatggtgtcaaca |
48408828 |
T |
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| Q |
166 |
agagacttacaatttgtttcaaacaacacaatatgcattccgtttgaggttgctgtctttatagattctagtaaagcaataaattcagcttctaaaacag |
265 |
Q |
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| T |
48408829 |
agagacttacaatttgtttcaaacaacacaatatgcattccgtttgaggttgccgtctttatagattctagtaaagcgataaatttaacttctaaaacag |
48408928 |
T |
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| Q |
266 |
tatcagctgagagtaagaatcttgatttaccaagcagaagttgtcccaaagagtttgtaa |
325 |
Q |
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| T |
48408929 |
tatcagctgagagtaagaaacttga-ttaccaagcagaagttgtcccaaagagtttgtaa |
48408987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 44 - 313
Target Start/End: Original strand, 18221539 - 18221810
Alignment:
| Q |
44 |
attagtttgcctcttaacaaaacacattacatagttgggattactagataacaaact--gacattaagatacaagattaccaaacttgctaatgggaaca |
141 |
Q |
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| T |
18221539 |
attagcttgcctcttaacaaacgacactacatagtcgggattactagaccacagcctaagacattgggatacaagattaccaaactcactaatgggaaca |
18221638 |
T |
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| Q |
142 |
atagaagatgtaatggtgtcaacaagagacttacaatttgtttcaaacaacacaatatgcattccgtttgaggttgctgtctttatagattctagtaaag |
241 |
Q |
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| T |
18221639 |
gcaggagatgtaagggcgtcaataagatacttacaatctatttcaaacaatacagtatgcattccgtttgagattgtcgtctttatagattcaagtaaag |
18221738 |
T |
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| Q |
242 |
caataaattcagcttctaaaacagtatcagctgagagtaagaatcttgatttaccaagcagaagttgtccca |
313 |
Q |
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| T |
18221739 |
cgatagattcagcttctagaacagtggcaaatgagagtaagaatcctgatttaccaagcaaaagttgtccca |
18221810 |
T |
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