View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_high_3 (Length: 620)

Name: NF6518_high_3
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_high_3
NF6518_high_3
[»] chr2 (5 HSPs)
chr2 (12-255)||(44686107-44686350)
chr2 (37-228)||(27648323-27648512)
chr2 (37-227)||(36338908-36339097)
chr2 (12-186)||(26690541-26690713)
chr2 (130-227)||(6489861-6489957)
[»] chr1 (5 HSPs)
chr1 (37-274)||(47833726-47833970)
chr1 (12-206)||(25588688-25588881)
chr1 (122-203)||(2079121-2079202)
chr1 (37-97)||(26310397-26310455)
chr1 (378-418)||(21431299-21431339)
[»] chr5 (4 HSPs)
chr5 (52-246)||(33827449-33827643)
chr5 (52-196)||(17895633-17895777)
chr5 (378-428)||(11129216-11129266)
chr5 (46-227)||(33544900-33545082)
[»] chr8 (3 HSPs)
chr8 (38-223)||(15051490-15051673)
chr8 (128-227)||(24542630-24542730)
chr8 (67-172)||(30181936-30182043)
[»] chr6 (6 HSPs)
chr6 (18-231)||(14802747-14802964)
chr6 (37-192)||(353012-353167)
chr6 (12-201)||(12273588-12273776)
chr6 (12-96)||(31405610-31405694)
chr6 (52-103)||(10042270-10042321)
chr6 (147-190)||(31405733-31405776)
[»] chr3 (6 HSPs)
chr3 (12-197)||(24734238-24734423)
chr3 (37-209)||(53833904-53834076)
chr3 (37-197)||(53837502-53837662)
chr3 (128-206)||(16196767-16196845)
chr3 (113-201)||(3083767-3083853)
chr3 (113-201)||(7910312-7910400)
[»] chr4 (3 HSPs)
chr4 (377-485)||(27070875-27070983)
chr4 (377-485)||(27150961-27151069)
chr4 (120-227)||(54572844-54572951)
[»] chr7 (2 HSPs)
chr7 (52-216)||(38787055-38787217)
chr7 (122-191)||(4648282-4648351)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 7e-97; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 44686107 - 44686350
Alignment:
Q  12 tcatcaaattaaatagaaaatagagaacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttc 111  Q
    ||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||    
T  44686107 tcatcaaattaaatagagaatagaaaacttctcgattattgactgaggcatgcaaaatgcactgggcttaagagtatttcgccacctcggataagttatc 44686206  T
Q  112 cgatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattga 211  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||    
T  44686207 cgatgcgataggtctcatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaatcacttatgga 44686306  T
Q  212 tgctcatgggaacttataattttttattagtgactgaataaaat 255  Q
    |||| ||||||||||||||||| |||||||||||| ||| ||||    
T  44686307 tgcttatgggaacttataatttgttattagtgactaaattaaat 44686350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 27648512 - 27648323
Alignment:
Q  37 aacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaat 136  Q
    |||||||||||||| || |||||| || ||  |||| | | ||||| |||||||||||||||||||||| || ||||||| ||||||||| |||||||||    
T  27648512 aacttatcgattattgattgaggcgtggaa--tgcattggacttaaaagtatttcgccaccttggataaattatccgatgcgataggtctcatagctaat 27648415  T
Q  137 actctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctcatgggaacttat 228  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||| |||| |||||||||||||||||||    
T  27648414 actctccaggatacaacagtcgcttcttgctagcaccgcacatggattaacaaggtctcaaaaaccacttatggatgctcatgggaacttat 27648323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 37 - 227
Target Start/End: Original strand, 36338908 - 36339097
Alignment:
Q  37 aacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaat 136  Q
    |||||||||| ||| ||||||||| ||||  | ||||| || ||||||||||||||||| || | ||| |||  ||||||   ||| |||  | |||| |    
T  36338908 aacttatcgaatattgactgaggcgtgcacgaagcact-ggtttaagagtatttcgccatctcgaataggttacccgatgcagtagatctcgtggctagt 36339006  T
Q  137 actctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctcatgggaactta 227  Q
    |||||||||||||||||||||  ||||||||||||||||| ||| ||||| |||||||||| ||||| || |  |||||||||| ||||||    
T  36339007 actctccaggatacaacagtcagttcttgctagcaccgcatgtgaattagtaaggtctcagaaaccacttttgaatgctcatggaaactta 36339097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 26690541 - 26690713
Alignment:
Q  12 tcatcaaattaaatagaaaatagagaacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttc 111  Q
    ||||||||||||||| | |||| | |||||||||||||| || |||||| || || |  || | | |||||||||||||| ||||| |||||| ||| ||    
T  26690541 tcatcaaattaaataaagaataaaaaacttatcgattattgaatgaggcgtgtaata--cattggacttaagagtatttcaccaccatggataggttatc 26690638  T
Q  112 cgatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattag 186  Q
    |||||   | ||||| ||||||| ||||||| |  |||||||| ||  || |||||||||||  ||||| |||||    
T  26690639 cgatgcagttggtctcatagctagtactctctataatacaacaatcattttttgctagcaccatacgtgaattag 26690713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 6489957 - 6489861
Alignment:
Q  130 agctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctcatgggaactta 227  Q
    ||||| ||||||| |||||||||| ||| | | |||||||| |||||| || ||||||| |||||||  |||||||| | ||||||||||| ||||||    
T  6489957 agctagtactctcgaggatacaacggtcaccttttgctagcgccgcacatgaattagcagggtctcaa-aaccatttttggatgctcatggaaactta 6489861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 37 - 274
Target Start/End: Complemental strand, 47833970 - 47833726
Alignment:
Q  37 aacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaat 136  Q
    |||||||||||||| ||||||||||||||  | ||| | ||||||||||||||||||||||  |||| | |  |||||||  |||||||| |||||||||    
T  47833970 aacttatcgattattgactgaggcatgcatgaagcattgggcttaagagtatttcgccaccccggatgaatcatccgatgcaataggtctcatagctaat 47833871  T
Q  137 actctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctcatgggaacttata------- 229  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| ||||||||||||||||||||           
T  47833870 actctccagaatacaacagtcgcttcttgctagcaccgcacgtggattaacgaggtctcagaaaccacttatggatgctcatgggaacttataatttgtt 47833771  T
Q  230 attttttattagtgactgaataaaataagagatgaaagaagccat 274  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  47833770 atttgttattagtgactaaataaaataagagatgaaagaagccat 47833726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 25588881 - 25588688
Alignment:
Q  12 tcatcaaattaaatagaaaatagagaacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttc 111  Q
    ||||||||||||||||| |||||| |||||||||||||| |||| |||  |||| |  | |||  |||||||||||||||||||||  | |||  || |     
T  25588881 tcatcaaattaaatagagaatagaaaacttatcgattattgactaaggtgtgcacatagtactttgcttaagagtatttcgccaccacgaatagattatt 25588782  T
Q  112 cgatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccattt 206  Q
    ||||  | ||| ||| ||||||| |||||||||| ||||| | ||| |||||||||||||||||||||| ||||||||||||||| |||| ||||    
T  25588781 cgatacggtagatctcatagctagtactctccagaataca-cggtcacttcttgctagcaccgcacgtgaattagcaaggtctcatgaacaattt 25588688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 2079121 - 2079202
Alignment:
Q  122 ggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaacca 203  Q
    ||||| |||||||||| ||||||||||||||||||| | |||| ||| ||||||||||  ||||||||||||||| ||||||    
T  2079121 ggtctcatagctaatattctccaggatacaacagtcacgtcttactaacaccgcacgtaaattagcaaggtctcatgaacca 2079202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 26310397 - 26310455
Alignment:
Q  37 aacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccacc 97  Q
    |||||||||||||| ||||||||| ||| |  |||||||||||||||||||||| ||||||    
T  26310397 aacttatcgattattgactgaggcttgcga--tgcactaggcttaagagtattttgccacc 26310455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 21431299 - 21431339
Alignment:
Q  378 aaatagttgttacaaagaccaaatcaaagcttggactaaaa 418  Q
    |||||||| ||||||||||||||||||||  ||||||||||    
T  21431299 aaatagttattacaaagaccaaatcaaagtgtggactaaaa 21431339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 52 - 246
Target Start/End: Complemental strand, 33827643 - 33827449
Alignment:
Q  52 gactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaatactctccaggataca 151  Q
    ||||||||| ||||  | ||||| ||||||||||||||| ||||||  |||| | |   | |||| ||||||||| |||| |||||||||||||||||||    
T  33827643 gactgaggcgtgcacgaagcactgggcttaagagtattttgccaccccggatgaatcacctgatgcgataggtctcatagataatactctccaggataca 33827544  T
Q  152 acagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctcatgggaacttataattttttattagtgact 246  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||| |||||||||||||||| ||||||||||||    
T  33827543 acaatcgcttcttgctagcaccgcacgtggattagcaaggtctcaagaatcacttatggatgctcttgggaacttataatttattattagtgact 33827449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 17895777 - 17895633
Alignment:
Q  52 gactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaatactctccaggataca 151  Q
    |||||||||  |||||| ||||| ||||||||||||||| ||| ||  |||| |||| |||| | |  | ||||| | ||||| ||||||||||||||||    
T  17895777 gactgaggctagcaaaaagcacttggcttaagagtattttgccgccacggattagttatccggtatagttggtctcacagctagtactctccaggataca 17895678  T
Q  152 acagtcgcttcttgctagcaccgcacgtggattagcaaggtctca 196  Q
    ||| || |||||||||| |||||||| || | |||||||||||||    
T  17895677 acaatcacttcttgctaacaccgcacatgaactagcaaggtctca 17895633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 378 - 428
Target Start/End: Original strand, 11129216 - 11129266
Alignment:
Q  378 aaatagttgttacaaagaccaaatcaaagcttggactaaaaacaagtaaaa 428  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||||    
T  11129216 aaatagttgttacaaagaccaaatcaaagcctggagtaaaagcaagtaaaa 11129266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 46 - 227
Target Start/End: Original strand, 33544900 - 33545082
Alignment:
Q  46 attatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaatactctccag 145  Q
    ||||| |||||||||||||||||| || |  | |||||||||||| | |||| |||||   |   | |||||| | ||||| ||||||| |||||||||     
T  33544900 attattgactgaggcatgcaaaatacaatgagtttaagagtatttaggcaccatggatggatcacctgatgtggttggtctcatagctagtactctccat 33544999  T
Q  146 gatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttatt-gatgctcatgggaactta 227  Q
    |||||| ||||| | ||||||||||| |||||||| ||||| ||  | |||||||| | || || |||||||| |||||||||    
T  33545000 gatacagcagtcacatcttgctagcatcgcacgtgaattagaaaaatatcaggaacaacttcttggatgctcaagggaactta 33545082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 15051673 - 15051490
Alignment:
Q  38 acttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaata 137  Q
    ||||||||||||| ||||||| | |||||  |||| | || ||||||||||||||||| |  ||||||||| ||||||| ||||| ||| ||||||||||    
T  15051673 acttatcgattattgactgagacgtgcaa--tgcattgggtttaagagtatttcgccatcccggataagttatccgatgcgatagatctcatagctaata 15051576  T
Q  138 ct-ctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctcatgggaa 223  Q
    || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||| |||||    
T  15051575 cttctccagaata-aacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcagaaaccacttatggatgctcaagggaa 15051490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 24542730 - 24542630
Alignment:
Q  128 atagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttatt-gatgctcatgggaactt 226  Q
    ||||||| |||||||||| |||||||| ||   |||||||||||||||||||| ||||||||||||||| |||| |||| || |||||| | ||||||||    
T  24542730 atagctagtactctccagaatacaacaatcatatcttgctagcaccgcacgtgaattagcaaggtctcatgaacaatttcttggatgctaaagggaactt 24542631  T
Q  227 a 227  Q
    |    
T  24542630 a 24542630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 30181936 - 30182043
Alignment:
Q  67 aatgcactaggcttaagagtatttcgccaccttggataagttttccgat--gtgataggtcttatagctaatactctccaggatacaacagtcgcttctt 164  Q
    ||||||||||||||||||||||||||||| |  |||||||||  |||||  | |  |||||| || |||| |||||| || |||||||||||| ||||||    
T  30181936 aatgcactaggcttaagagtatttcgccatcagggataagttacccgatgcgcggcaggtctcattgctagtactctgcaagatacaacagtcacttctt 30182035  T
Q  165 gctagcac 172  Q
    ||||||||    
T  30182036 gctagcac 30182043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 14802964 - 14802747
Alignment:
Q  18 aattaaatagaaaatagagaa-cttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtat----ttcgccaccttggataagttttcc 112  Q
    ||||||||||| |||||| || |||||||||||| | |||||||||||| ||  |||| || ||||||||||    || |||||||   ||||||| | |    
T  14802964 aattaaatagagaatagaaaaacttatcgattattggctgaggcatgcacaaaacactgggtttaagagtatatattttgccacctcaaataagttattc 14802865  T
Q  113 gatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgat 212  Q
    |||| ||||| ||| |||||||||||||||||||||||||||  | |||||||||||||| ||||||| ||||||||||| ||||||| || || | |||    
T  14802864 gatgcgatagatctgatagctaatactctccaggatacaacaaccacttcttgctagcactgcacgtgaattagcaaggtttcaggaaacactt-tggat 14802766  T
Q  213 gctcatgggaacttataat 231  Q
    |||||||| ||||||||||    
T  14802765 gctcatggaaacttataat 14802747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 353167 - 353012
Alignment:
Q  37 aacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaat 136  Q
    |||| ||||||||| ||||||||| ||||  | ||||| ||||||||||||||||||||||  | |||  || ||||||| ||||||||| | |||||||    
T  353167 aactcatcgattattgactgaggcgtgcacgaagcactgggcttaagagtatttcgccaccccgaatagattatccgatgcgataggtctcacagctaat 353068  T
Q  137 actctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggt 192  Q
    |||||||||||||||| | || ||||||||||| | |||||||| |||||||||||    
T  353067 actctccaggatacaataatcacttcttgctagtatcgcacgtgaattagcaaggt 353012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 12273776 - 12273588
Alignment:
Q  12 tcatcaaattaaatagaaaatagagaacttatcgat--tatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttt 109  Q
    ||||||||||||||||| |||||| |||||||||||  ||| || |||||| |||||  |||||  ||||||||||||||| |||| |  ||||   |      
T  12273776 tcatcaaattaaatagagaataga-aacttatcgatattattgattgaggcgtgcaa--tgcaccgggcttaagagtattttgccatcccggatggatca 12273680  T
Q  110 tccgatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaac 201  Q
     || ||| ||||||||| |||| |||||||||  ||||||||||| || ||||||||||||||| || ||| ||||||||||||||| ||||    
T  12273679 cccaatgcgataggtctcatagttaatactctttaggatacaacaatcacttcttgctagcaccacatgtgaattagcaaggtctcatgaac 12273588  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 31405610 - 31405694
Alignment:
Q  12 tcatcaaattaaatagaaaatagagaacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccac 96  Q
    ||||||||||||||||| |||||| || ||||||||||| || |||| | ||||||||||| |  ||||||||||||||||||||    
T  31405610 tcatcaaattaaatagagaatagaaaatttatcgattattgagtgagacgtgcaaaatgcattgagcttaagagtatttcgccac 31405694  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 10042321 - 10042270
Alignment:
Q  52 gactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggat 103  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||| ||||    
T  10042321 gactgaggcatgcaaaatgcactgggcttaagaatatttcaccacctcggat 10042270  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 31405733 - 31405776
Alignment:
Q  147 atacaacagtcgcttcttgctagcaccgcacgtggattagcaag 190  Q
    ||||||||||| |||||||||| ||||||||||| |||||||||    
T  31405733 atacaacagtcacttcttgctaacaccgcacgtgaattagcaag 31405776  T

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Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 24734238 - 24734423
Alignment:
Q  12 tcatcaaattaaatagaaaatagagaacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttc 111  Q
    ||||||||||||||||| |||||| |||||||| ||||| ||||||||  ||||  | ||||    |||||||||| |||||||||   |||| ||| ||    
T  24734238 tcatcaaattaaatagagaatagaaaacttatcaattattgactgaggtgtgcacgaagcaccgaacttaagagtacttcgccaccccagataggttatc 24734337  T
Q  112 cgatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcag 197  Q
     ||||   ||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||| ||| ||||||||||||||||    
T  24734338 tgatgcagtaggtctcatagctaatactctccaggatacaacagtcacatcttactagcaccgcatgtgaattagcaaggtctcag 24734423  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 53833904 - 53834076
Alignment:
Q  37 aacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaat 136  Q
    |||||||||||||| |  |||||| ||||  | ||||| |||| |||||||||| |||| |  |||||| |   |||||| ||||||||| |||||||||    
T  53833904 aacttatcgattattggttgaggcgtgcatgaagcactgggctgaagagtattttgccatcccggataaataacccgatgcgataggtctcatagctaat 53834003  T
Q  137 actctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttatt 209  Q
    ||||| |||||||||||| || |||||| ||||||||||| ||| |||||||||||||||||||||| |||||    
T  53834004 actctgcaggatacaacaatcacttcttcctagcaccgcatgtgaattagcaaggtctcaggaaccacttatt 53834076  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 37 - 197
Target Start/End: Original strand, 53837502 - 53837662
Alignment:
Q  37 aacttatcgattatcgactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaat 136  Q
    |||||||||||||| ||||||||| ||||  | | | | ||||||||||||||||||||||| |||| | |  ||||||| ||||| ||| |||| ||||    
T  53837502 aacttatcgattattgactgaggcgtgcatgaagtattgggcttaagagtatttcgccacctcggatgaatcatccgatgcgatagatctcatagttaat 53837601  T
Q  137 actctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcag 197  Q
    ||||| |||||||||||| || ||| ||||||||||||||  || ||||||||||||||||    
T  53837602 actctgcaggatacaacaatcactttttgctagcaccgcatatgaattagcaaggtctcag 53837662  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 16196767 - 16196845
Alignment:
Q  128 atagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccattt 206  Q
    ||||||| |||| |||| ||||||||| || |||||||||||||||||| ||| |||| |||||||||| |||||||||    
T  16196767 atagctagtactttccatgatacaacaatcacttcttgctagcaccgcatgtgaattaacaaggtctcatgaaccattt 16196845  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 3083853 - 3083767
Alignment:
Q  113 gatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaac 201  Q
    |||| ||||||||| |||||||||||||| ||| ||||| ||||| |||||||||||||||||| ||| ||  ||||||||||| ||||    
T  3083853 gatgcgataggtctcatagctaatactcttcagaatacagcagtcacttcttgctagcaccgcatgtgaat--gcaaggtctcatgaac 3083767  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 7910312 - 7910400
Alignment:
Q  113 gatgtgataggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaac 201  Q
    |||||| ||| ||| || |||| |||||| ||||||||||||||| |||||||||| ||||||| ||| | ||| |||||||| |||||    
T  7910312 gatgtggtagatctcatggctagtactcttcaggatacaacagtcacttcttgctaacaccgcatgtgaaatagtaaggtctcgggaac 7910400  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 377 - 485
Target Start/End: Complemental strand, 27070983 - 27070875
Alignment:
Q  377 gaaatagttgttacaaagaccaaatcaaagcttggactaaaaacaagtaaaagccattcaataagcatttcaacatgtgtaaaacggctagcttaggaat 476  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||| ||||| ||||| |||| ||||||||||||||||||||||||| || | ||||    
T  27070983 gaaatagttgttataaagaccaaatcaaagcttggattaaaagcaagaaaaagtcattcgataatcatttcaacatgtgtaaaacggctaactgaagaat 27070884  T
Q  477 aggaaatat 485  Q
    |||||||||    
T  27070883 aggaaatat 27070875  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 377 - 485
Target Start/End: Complemental strand, 27151069 - 27150961
Alignment:
Q  377 gaaatagttgttacaaagaccaaatcaaagcttggactaaaaacaagtaaaagccattcaataagcatttcaacatgtgtaaaacggctagcttaggaat 476  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||| ||||| ||||| |||| ||||||||||||||||||||||||| || | ||||    
T  27151069 gaaatagttgttataaagaccaaatcaaagcttggattaaaagcaagaaaaagtcattcgataatcatttcaacatgtgtaaaacggctaactgaagaat 27150970  T
Q  477 aggaaatat 485  Q
    |||||||||    
T  27150969 aggaaatat 27150961  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 54572951 - 54572844
Alignment:
Q  120 taggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctcatg 219  Q
    ||||||| ||||||||||| ||||| ||||||| |||| | |||||||||||||||||||| |||| ||| ||||||||||| | |  | ||||||||||    
T  54572951 taggtctcatagctaataccctccaagatacaaaagtcacatcttgctagcaccgcacgtgaattaacaaagtctcaggaactactcttggatgctcatg 54572852  T
Q  220 ggaactta 227  Q
    ||||||||    
T  54572851 ggaactta 54572844  T

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Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 38787217 - 38787055
Alignment:
Q  52 gactgaggcatgcaaaatgcactaggcttaagagtatttcgccaccttggataagttttccgatgtgataggtcttatagctaatactctccaggataca 151  Q
    ||||||||| ||||||||||||| | ||||||||||||||| |||| |||||   || |||||||   ||||||  |||| || ||||||||||||||||    
T  38787217 gactgaggcgtgcaaaatgcactggacttaagagtatttcgtcaccctggattgattatccgatgcagtaggtc--atagttagtactctccaggataca 38787120  T
Q  152 acagtcgcttcttgctagcaccgcacgtggattagcaaggtctcaggaaccatttattgatgctc 216  Q
    |||||| | |||||||||||||||| ||| |||| ||| ||||||| ||||| || | |||||||    
T  38787119 acagtcacatcttgctagcaccgcatgtgaattaacaaagtctcagaaaccacttttagatgctc 38787055  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 4648282 - 4648351
Alignment:
Q  122 ggtcttatagctaatactctccaggatacaacagtcgcttcttgctagcaccgcacgtggattagcaagg 191  Q
    ||||| ||||||| |||||| ||||||||||||||| |||||||||| ||| |||| || ||||||||||    
T  4648282 ggtctcatagctagtactcttcaggatacaacagtcacttcttgctaacactgcacatgaattagcaagg 4648351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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