View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_31 (Length: 292)
Name: NF6518_high_31
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 41562139 - 41562416
Alignment:
| Q |
1 |
aggagctattgatcaattcaaagaatctgaactctcagcacaagggatattggtgaatacttttgaggagctggagaaggtttatgttagaggttatgag |
100 |
Q |
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| T |
41562139 |
aggagctattgatcaattcaaagaatctgaactctcagcacaagggatattggtgaatacttttgaggagctggagaaggtttatgttagaggttatgag |
41562238 |
T |
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| Q |
101 |
aaagttgctaaaaaggtttggtgtataggaccactttccttgcatgacaagttaaccttcaacaagtttggtaaagacgataagggattcatcgatgatt |
200 |
Q |
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| T |
41562239 |
aaagttgctaaaaaggtttggtgtataggaccactttccttgcatgacaggttaaccttcaacaagtttggtaaagacgataagggattcatcgacgatt |
41562338 |
T |
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| Q |
201 |
ccgaaaccaaatgtctaaagtttcttatttcaaacaaagcttgttctgtcatctatgcatgttttggtagtttatctt |
278 |
Q |
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| T |
41562339 |
ccgaaaccaaatgtctaaagtttcttatttcaaacaaagcttgttctgtcatctatgcatgttttggtagtttatctt |
41562416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 166 - 278
Target Start/End: Original strand, 46656889 - 46657001
Alignment:
| Q |
166 |
gtttggtaaagacgataagggattcatcgatgattccgaaaccaaatgtctaaagtttcttatttcaaacaaagcttgttctgtcatctatgcatgtttt |
265 |
Q |
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| T |
46656889 |
gtttggtaaaaacgataagggatgcatcaatgattctgaaaccaaatgtctaaagttttttatttgaaacaaagcttgctctgtcatatatgcatgtttt |
46656988 |
T |
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| Q |
266 |
ggtagtttatctt |
278 |
Q |
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| T |
46656989 |
ggtagtttgtctt |
46657001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 46656792 - 46656852
Alignment:
| Q |
4 |
agctattgatcaattcaaagaatctgaactctcagcacaagggatattggtgaatactttt |
64 |
Q |
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| T |
46656792 |
agctattgatcaattcaaagaatctaaactctcagcacaaggaatattggtgaatactttt |
46656852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 46656862 - 46656890
Alignment:
| Q |
94 |
ttatgagaaagttgctaaaaaggtttggt |
122 |
Q |
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| T |
46656862 |
ttatgagaaagttgctaaaaaggtttggt |
46656890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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