View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_33 (Length: 282)
Name: NF6518_high_33
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 45656695 - 45656945
Alignment:
| Q |
19 |
cttctaactatcataaccaactttcacctaatcataaactatcttctaactaccttaaaccaattctatcaaatcattctataactaaatatctaaccga |
118 |
Q |
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| T |
45656695 |
cttctaacaatcataaccaactttcacctaatcataaactatcttctaactaccttaaaccaattctatcaaatcattctataactaaatatctaaccga |
45656794 |
T |
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| Q |
119 |
gtttgacacagaaaattacgtgaaaaacaatcaacaatgttggtaaatagcggatagtnnnnnnntaacttttgttcaaattccgctatgctaaggtgct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| |
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| T |
45656795 |
gtttgacacagaaaattacgtgaaaaacaatcaacaatgttggtaaatagcggatagtaaaaaaataacttttgttcaaattctgctatgctacggtgct |
45656894 |
T |
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| Q |
219 |
atagtgccactatggcagcattaaaattgaatattgggcttacatacatat |
269 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45656895 |
atagtgccactatggcagcattcaaattgaatattgggcttacatacatat |
45656945 |
T |
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