View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_4 (Length: 567)
Name: NF6518_high_4
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 230 - 397
Target Start/End: Complemental strand, 32531757 - 32531585
Alignment:
| Q |
230 |
aaattatcatagacaaaatttcatgttacaagttgtgtcgcaatctgattcnnnnnnnnnng-----ttgtgtcgcaatctttgatattagacgttgtgt |
324 |
Q |
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| T |
32531757 |
aaattatcatagacaaaatttcatgttacaagttgtgtcgcaatctgattcaaaaaaaaaaaaaatattgtgtcgcaatctttgatattagacgttgtgt |
32531658 |
T |
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| Q |
325 |
tgtgtcgcatttgatgatactgtagataatttgtagttaactttttgtgtgattgcaatttcatcatatactt |
397 |
Q |
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| T |
32531657 |
tgtgtcgcatttgatgatattgtagataatttgtagttaactttttgtgtgattgcaatttcatcatagactt |
32531585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 408 - 561
Target Start/End: Complemental strand, 32531600 - 32531445
Alignment:
| Q |
408 |
atttcatcatagacttaaaaacatgaaaaaagtttgtgtcacaaattagattccagtaacattttnnnnnnnn--tccctaatcattagtataataatca |
505 |
Q |
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| T |
32531600 |
atttcatcatagacttaaaaacatgaaaaaagtttgtgtcgcaaattagattccagtaacattttaaaagaaaaatccttaatcattagtataataatca |
32531501 |
T |
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| Q |
506 |
taatcatgttactctctagtttttaatcatactcatcgttgtccttttcatctcac |
561 |
Q |
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| T |
32531500 |
taatcatgttactctctagtttttagtcatactcatcgttgtccttttcatgtcac |
32531445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 32531938 - 32531845
Alignment:
| Q |
19 |
tcaagctgaatatcctgattactactttcgtatcaccaacagtgagcacatgactgaccttaaggaaaaattcaagcgcatgtgtatgtctcta |
112 |
Q |
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| T |
32531938 |
tcaagctgaatatcctgattactactttcgtatcaccaacagtgagcacatgactgaccttaaggaaaaattcaagcgcatgtgtatgtctcta |
32531845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 35250519 - 35250591
Alignment:
| Q |
32 |
cctgattactactttcgtatcaccaacagtgagcacatgactgaccttaaggaaaaattcaagcgcatgtgta |
104 |
Q |
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| T |
35250519 |
cctgattactactttcgtgttacaaacagtgaacacatgacagaactcaagcataaattcaagtgcatgtgta |
35250591 |
T |
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