View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6518_high_40 (Length: 249)
Name: NF6518_high_40
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_40 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0334 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 11177573 - 11177325
Alignment:
| Q |
1 |
caatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacattattactcaacccgattttattttgcagc |
100 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177573 |
caatccaatttcttattactttcttactcaattccaattgttattacttattatattatatcgctgcacattattactcaacccgattttattttgcagc |
11177474 |
T |
|
| Q |
101 |
acttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaattgaattgttgttgcggggctgagcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
11177473 |
acttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaattgaattgttgttgctgggctgagtata |
11177374 |
T |
|
| Q |
201 |
taacaattgttattgctgagtacgtgtgccatataatccatatattttc |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11177373 |
taacaattgttattgctgagtacgtgtgccatataatccatatattttc |
11177325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0334 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 16393 - 16659
Alignment:
| Q |
1 |
caatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacattattactcaacccgattttattttgcagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16393 |
caatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacattattactcaacccgattttattttgcagc |
16492 |
T |
|
| Q |
101 |
acttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaattgaattg------------------tt |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16493 |
acttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaattgaattgttgttgttggctgttccatt |
16592 |
T |
|
| Q |
183 |
gttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttc |
249 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16593 |
gttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttc |
16659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University