View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_high_46 (Length: 239)

Name: NF6518_high_46
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_high_46
NF6518_high_46
[»] chr1 (2 HSPs)
chr1 (31-220)||(7098679-7098868)
chr1 (35-222)||(7582376-7582563)
[»] chr4 (2 HSPs)
chr4 (35-217)||(13615872-13616052)
chr4 (87-194)||(20297276-20297383)
[»] chr5 (10 HSPs)
chr5 (35-217)||(17982186-17982368)
chr5 (82-203)||(30399383-30399504)
chr5 (87-212)||(30243027-30243152)
chr5 (87-212)||(30748966-30749091)
chr5 (150-196)||(30522302-30522348)
chr5 (150-196)||(30562642-30562688)
chr5 (95-196)||(17418840-17418941)
chr5 (152-203)||(30474760-30474811)
chr5 (89-212)||(30714089-30714212)
chr5 (87-212)||(30677823-30677948)
[»] chr7 (1 HSPs)
chr7 (82-193)||(26706650-26706761)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 7098679 - 7098868
Alignment:
Q  31 agatatggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098679 agatatggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaa 7098778  T
Q  131 agcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098779 agcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacag 7098868  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 7582563 - 7582376
Alignment:
Q  35 atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca 134  Q
    |||||||||||||||||||||||||||||||||| ||  |||||     || |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  7582563 atggtagtttaccaagtgatgaaaaccgttcacagtgcatgcaacccttaatttcaagagtaactaaattaccaagagttctgatccaacttgggaagca 7582464  T
Q  135 taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacagtg 222  Q
    ||| |||| |||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| |||| ||||    
T  7582463 taaacctttgtaaaaatctattttcaagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatagtg 7582376  T

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Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 13615872 - 13616052
Alignment:
Q  35 atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca 134  Q
    ||||||||||||||||||||||||||||||| |||||   ||||     ||||| ||||||||||||||||||| ||||||||||||||||||  |||||    
T  13615872 atggtagtttaccaagtgatgaaaaccgttctcaatgcacgcaatccttaactttaagagtaactaaattactatgagttctgatccaacttgagaagca 13615971  T
Q  135 taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataa 217  Q
    |||||||| |||||||| ||||||||||||||||||||||| | |||| ||||||||||||| ||||||||||||||| ||||    
T  13615972 taatcctttgtaagaatatattttcaagctcttgagatttgga-gagg-tgaagcacttcaagtacttgatcatcactaataa 13616052  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 20297383 - 20297276
Alignment:
Q  87 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 186  Q
    ||||| || |||||||||||||||| |  | ||||||||||| || || ||||| |  ||  ||| ||||| ||||| |||||||||||  |||||||||    
T  20297383 ttcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggttga 20297284  T
Q  187 agcacttc 194  Q
    ||||||||    
T  20297283 agcacttc 20297276  T

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Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 17982186 - 17982368
Alignment:
Q  35 atggtagtttaccaagtgatgaaaaccgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagca 134  Q
    ||||||||||||||||||||||||||||||||||| |  |||||     |||   |||||||| |||||| ||||||||||||||||||||||| |||||    
T  17982186 atggtagtttaccaagtgatgaaaaccgttcacaaagcatgcaatccttaacaataagagtaagtaaattgctaagagttctgatccaacttgggaagca 17982285  T
Q  135 taatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataa 217  Q
    ||||||||||||| ||| ||||||||||| ||| |||||| | ||||||||||||||||||| |||  |||||||||| ||||    
T  17982286 taatccttggtaataatatattttcaagcccttaagatttctgtgaggttgaagcacttcaaatacacgatcatcactaataa 17982368  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 30399383 - 30399504
Alignment:
Q  82 ccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgag 181  Q
    |||| |||||||| |||||||||||||||| |  | ||||||||||| ||  ||||||| |  ||  ||| ||||||||||| |||||||||||  ||||    
T  30399383 ccaagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgag 30399482  T
Q  182 gttgaagcacttcaattacttg 203  Q
    ||||||||||||| | ||||||    
T  30399483 gttgaagcacttcgagtacttg 30399504  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 30243152 - 30243027
Alignment:
Q  87 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 186  Q
    |||||||| || |||||||||||||    | ||||||||||| ||| ||||||| |  ||  ||  ||||||||||| |||||||||||  |||||||||    
T  30243152 ttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttgagtgaggttga 30243053  T
Q  187 agcacttcaattacttgatcatcact 212  Q
    |||||||||| |||||| ||| ||||    
T  30243052 agcacttcaagtacttgctcagcact 30243027  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 30748966 - 30749091
Alignment:
Q  87 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 186  Q
    |||||||| || ||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||||||    
T  30748966 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttga 30749065  T
Q  187 agcacttcaattacttgatcatcact 212  Q
    |||||||||| |||||| ||| ||||    
T  30749066 agcacttcaagtacttgctcagcact 30749091  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 30522348 - 30522302
Alignment:
Q  150 atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa 196  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  30522348 atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa 30522302  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 30562688 - 30562642
Alignment:
Q  150 atgtattttcaagctcttgagatttgtatgaggttgaagcacttcaa 196  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||||    
T  30562688 atgtattttcaagatcttgagatttgagtgaggttgaagcacttcaa 30562642  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 17418941 - 17418840
Alignment:
Q  95 taactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaagcacttc 194  Q
    ||||||||||||||||| | || ||||||||||| ||  ||| ||| |  ||  ||  ||||||||||| |||||||||||  |||||||||||||||||    
T  17418941 taactaaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttc 17418842  T
Q  195 aa 196  Q
    ||    
T  17418841 aa 17418840  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 30474760 - 30474811
Alignment:
Q  152 gtattttcaagctcttgagatttgtatgaggttgaagcacttcaattacttg 203  Q
    |||||||||| |||||||||||||  ||||||||||||| ||||| ||||||    
T  30474760 gtattttcaacctcttgagatttgagtgaggttgaagcatttcaagtacttg 30474811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 30714212 - 30714089
Alignment:
Q  89 caagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttgaag 188  Q
    |||||| |||||||||||||||| |  | ||||||||||| ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||||||||    
T  30714212 caagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaag 30714113  T
Q  189 cacttcaattacttgatcatcact 212  Q
    | |||| | |||||| ||| ||||    
T  30714112 ctcttcgagtacttgctcagcact 30714089  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 30677948 - 30677823
Alignment:
Q  87 ttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgaggttga 186  Q
    |||||||| || ||||||||||||| |  | ||||||||||| ||  |||||| ||  ||  ||| |||| ||||||  ||||||||||  ||||||| |    
T  30677948 ttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggttta 30677849  T
Q  187 agcacttcaattacttgatcatcact 212  Q
    |||||||||| |||||| ||| ||||    
T  30677848 agcacttcaagtacttgctcagcact 30677823  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 26706650 - 26706761
Alignment:
Q  82 ccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttcaagctcttgagatttgtatgag 181  Q
    |||| |||||||| |||||||||||||||| | || | ||||||||| ||  ||||||| | |||  | | ||||| ||||| |||||||||||  ||||    
T  26706650 ccaagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtgag 26706749  T
Q  182 gttgaagcactt 193  Q
    ||||||||||||    
T  26706750 gttgaagcactt 26706761  T

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