View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_high_49 (Length: 234)
Name: NF6518_high_49
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_49 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 33890270 - 33890492
Alignment:
| Q |
1 |
caataatgtcactaatatattttttgaccaaatattaatattattactctttaatatttgtagcataaatttacatcttttaaatcacacagagttgtgc |
100 |
Q |
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| T |
33890270 |
caataatgtcactaatatattttttgaccaaatattaatattattactctttaatatttgtagcataaattcacatcttttaaatcaca--gagttatgc |
33890367 |
T |
|
| Q |
101 |
aaagcattccttacatacaattatagcatttgctctttttgttttaaaaaggcaagaaaattgtaggagtttcatcacattatgctaattccctaaatag |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33890368 |
aaagcattccctacatacaattatagcatttgctctttttgttttaaaaaggcaagaaaattgtaggagtttcatcacattatgctaattccctaaatag |
33890467 |
T |
|
| Q |
201 |
atagatgacatggttatagtattat |
225 |
Q |
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||| ||||||||||||||||||||| |
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| T |
33890468 |
ataaatgacatggttatagtattat |
33890492 |
T |
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