View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_high_7 (Length: 504)

Name: NF6518_high_7
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_high_7
NF6518_high_7
[»] chr5 (5 HSPs)
chr5 (20-485)||(39952497-39952963)
chr5 (304-425)||(23920117-23920238)
chr5 (232-327)||(22917308-22917404)
chr5 (229-327)||(13596832-13596931)
chr5 (256-322)||(1685106-1685172)
[»] chr3 (3 HSPs)
chr3 (56-232)||(50416814-50416993)
chr3 (242-322)||(42614280-42614360)
chr3 (229-290)||(41053754-41053816)
[»] scaffold0001 (1 HSPs)
scaffold0001 (247-425)||(12729-12907)
[»] chr8 (5 HSPs)
chr8 (257-427)||(24847957-24848127)
chr8 (304-425)||(30344377-30344498)
chr8 (229-341)||(28940743-28940856)
chr8 (229-320)||(2680265-2680357)
chr8 (229-284)||(30344500-30344557)
[»] chr6 (11 HSPs)
chr6 (304-425)||(18985279-18985400)
chr6 (257-353)||(8746751-8746847)
chr6 (229-322)||(2627674-2627763)
chr6 (229-288)||(11681699-11681760)
chr6 (229-321)||(22978347-22978435)
chr6 (229-321)||(23809968-23810056)
chr6 (242-324)||(34218741-34218820)
chr6 (256-327)||(22721094-22721165)
chr6 (229-308)||(1363155-1363235)
chr6 (242-322)||(11168835-11168915)
chr6 (373-425)||(11682650-11682702)
[»] chr7 (8 HSPs)
chr7 (287-425)||(25350576-25350714)
chr7 (287-425)||(25356270-25356408)
chr7 (242-307)||(33097879-33097944)
chr7 (232-327)||(25731043-25731139)
chr7 (247-307)||(31299417-31299477)
chr7 (229-290)||(33105296-33105358)
chr7 (256-308)||(4478967-4479019)
chr7 (231-308)||(21895080-21895159)
[»] chr2 (4 HSPs)
chr2 (230-339)||(25123459-25123571)
chr2 (229-320)||(45003691-45003783)
chr2 (242-308)||(15084343-15084409)
chr2 (267-319)||(44800576-44800628)
[»] chr4 (4 HSPs)
chr4 (229-320)||(5482954-5483046)
chr4 (229-320)||(1694811-1694903)
chr4 (242-321)||(36678774-36678851)
chr4 (242-306)||(1967467-1967531)
[»] chr1 (3 HSPs)
chr1 (229-327)||(29693301-29693400)
chr1 (229-322)||(52037420-52037514)
chr1 (242-322)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 39952963 - 39952497
Alignment:
Q  20 atgaaaaagaataactctgcgaatgnnnnnnnnnnntagttaagttagatgctagctttctcatcaatatatcactaaaataatagacacatccatgtca 119  Q
    |||||||||||||||||||||||||           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39952963 atgaaaaagaataactctgcgaatgaaaaaaaaaaatagttaagttagatgctagctttcacatcaatatatcactaaaataatagacacatccatgtca 39952864  T
Q  120 cattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttctgatgttaaccatcaaaacaaagtttatacaatcgatgatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39952863 cattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttctgatgttaaccatcacaacaaagtttatacaatcgatgatt 39952764  T
Q  220 tattctcatttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggt 319  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39952763 tattctcatttgaattacgtactttttaaaaatttgctctaacggagagatgttcaaattacagaacattgccatttttcataaatttgagaacgaaggt 39952664  T
Q  320 cgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaata 419  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952663 cgcataatccgaatatttgtgatgcatggtctaaagcatggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaata 39952564  T
Q  420 tagatgct-ccaaaaatgaagtgattagcgaaattagagcaccaacaaaaccagagttcaatctact 485  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39952563 tagatgctgccaaaaatgaagtgattagcgaaattaaagcaccaacaaaaccagagttcaatctact 39952497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 304 - 425
Target Start/End: Complemental strand, 23920238 - 23920117
Alignment:
Q  304 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 403  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  23920238 atttgtgaacgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcattaaagatagcataacaattattgtcattgcgtacataatg 23920139  T
Q  404 tactgcagcataaatatagatg 425  Q
    |||| ||||| |||||||||||    
T  23920138 tactccagcagaaatatagatg 23920117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 22917404 - 22917308
Alignment:
Q  232 aattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 327  Q
    ||||||||| |||||||||| |||||||||| ||| |||||||||||||||   ||||||||||| ||| |||||||| |||||||||| |||||||    
T  22917404 aattacgtaatttttaaaaaatttgctctaaaggatagatgttcaaattacgcgacattgccattcttcgtaaatttgagaacgaaggttgcataat 22917308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 13596931 - 13596832
Alignment:
Q  229 ttgaattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 327  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||||||||||    ||||||||||  ||| |||||||| |||||||||| |||||||    
T  13596931 ttgaattacgtattttttaaaaaaattgctctaaaggagagatgttcaaattatgcgacattgccatgcttcgtaaatttgagaacgaaggttgcataat 13596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 1685106 - 1685172
Alignment:
Q  256 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 322  Q
    |||||| ||||||||||||||||||| ||||||||| ||| ||| ||| |||| |||||||||||||    
T  1685106 ctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgc 1685172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 56 - 232
Target Start/End: Original strand, 50416814 - 50416993
Alignment:
Q  56 tagttaagttagatgctagctttctcatcaatatatcactaaaataata---gacacatccatgtcacattatcagatatatccaaacttttagtctttc 152  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||   |||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  50416814 tagttaagttagatgctagctttcacatcaatataacactaaaataataaatgacacagccatgtcacgttatcagatatatgcaaacttttagtctttc 50416913  T
Q  153 ccaaatatgttgcaagctatggtttctgatgttaaccatcaaaacaaagtttatacaatcgatgatttattctcatttga 232  Q
    ||| |||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||    
T  50416914 ccagatatgttgaaagcaatggtttctgatgttaaccatcacaacaaagtttatacaatctataatttattctcatttga 50416993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 322
Target Start/End: Original strand, 42614280 - 42614360
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 322  Q
    ||||||||||||| || ||| | |||||||||||||||||  |||||||  ||| |||  ||||||| |||||||||||||    
T  42614280 tttttaaaaatttactttaaagaagagatgttcaaattacgaaacattgttattcttcgaaaatttgagaacgaaggtcgc 42614360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 41053816 - 41053754
Alignment:
Q  229 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattg 290  Q
    ||||||||| || |||||||||| ||||||||||  | |||||||||||||||| ||||||||    
T  41053816 ttgaattacatattttttaaaaaatttgctctaaatgtgagatgttcaaattacggaacattg 41053754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 247 - 425
Target Start/End: Complemental strand, 12907 - 12729
Alignment:
Q  247 aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcat 346  Q
    ||||| || |||||| |||||||||||||||| |   || ||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  12907 aaaaaattactctaaaggagagatgttcaaatgaggaaatattgccattcttcgtaaatttaagaacgaaggtcgcataatccgaatatttgtgatgcat 12808  T
Q  347 ggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaatatagatg 425  Q
    | |||||  |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  12807 gatctaaggcatggcataaaagataacataacaatcattgtcattacatacataatgtactgcagcagaaatgtagatg 12729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 257 - 427
Target Start/End: Original strand, 24847957 - 24848127
Alignment:
Q  257 tctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaac 356  Q
    ||||| |||||||||||||||||| | ||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||  ||||||||||||||  |    
T  24847957 tctaaaggagagatgttcaaattataaaacattgtcattcttcgtaaatttgagaacgaaggtcgcataatccgaatatttacgatgcatggtctaaggc 24848056  T
Q  357 atggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaatatagatgct 427  Q
    ||  ||| ||||||| ||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||    
T  24848057 ataacatcaaagataacataacaaccattgtcattacatacataacgtactgcagcacaaatatagatgct 24848127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 304 - 425
Target Start/End: Complemental strand, 30344498 - 30344377
Alignment:
Q  304 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 403  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  30344498 atttgtgaatgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcataaaagatagcataacaattattgtcattgcgtacataatg 30344399  T
Q  404 tactgcagcataaatatagatg 425  Q
    |||| || || |||||||||||    
T  30344398 tactacaacagaaatatagatg 30344377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 28940743 - 28940856
Alignment:
Q  229 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 327  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |||| ||| |||| ||| |||| |||||| ||||||    
T  28940743 ttgaattacgtactttttaaaaaatttgttctaaaggagagatgttcaaattacagaacattgtcattcttcgtaaacttgagaacaaaggtcccataat 28940842  T
Q  328 ccgaatatttgtga 341  Q
    | ||||||||||||    
T  28940843 ctgaatatttgtga 28940856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 2680265 - 2680357
Alignment:
Q  229 ttgaattacgtactttt-taaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 320  Q
    |||||||||||| |||| |||||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  2680265 ttgaattacgtatttttttaaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 2680357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 30344557 - 30344500
Alignment:
Q  229 ttgaattacgtactttttaaaaa--tttgctctaatggagagatgttcaaattacaga 284  Q
    |||||||||||| |||| |||||  || ||||||| ||||||||||||||||||||||    
T  30344557 ttgaattacgtatttttcaaaaaaattagctctaaaggagagatgttcaaattacaga 30344500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 304 - 425
Target Start/End: Original strand, 18985279 - 18985400
Alignment:
Q  304 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 403  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  18985279 atttgtgaacgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcattaaagatagcataacaattattgtcattgcgtacataatg 18985378  T
Q  404 tactgcagcataaatatagatg 425  Q
    |||| ||||| |||||||||||    
T  18985379 tactccagcagaaatatagatg 18985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 8746751 - 8746847
Alignment:
Q  257 tctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaa 353  Q
    ||||| |||| |||||||||||||  |||||||| |||| ||| |||||||| |||| |||||||||||||| ||||||||  |||| |||||||||    
T  8746751 tctaaaggagggatgttcaaattatggaacattgtcattcttcgtaaatttgagaacaaaggtcgcataatctgaatatttacgatgtatggtctaa 8746847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 2627674 - 2627763
Alignment:
Q  229 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 322  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||    
T  2627674 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgctattcttcgtaaatttgagaacgaaggtcgc 2627763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 11681699 - 11681760
Alignment:
Q  229 ttgaattacgtacttttt--aaaaatttgctctaatggagagatgttcaaattacagaacat 288  Q
    ||||||||||||||||||  ||||| || |||||| ||||||||||||||||||||||||||    
T  11681699 ttgaattacgtacttttttaaaaaaattactctaaaggagagatgttcaaattacagaacat 11681760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 22978347 - 22978435
Alignment:
Q  229 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 321  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||   || ||| |||||||| ||||||||||||    
T  22978347 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcg 22978435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 321
Target Start/End: Complemental strand, 23810056 - 23809968
Alignment:
Q  229 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 321  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||   || ||| |||||||| ||||||||||||    
T  23810056 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcg 23809968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 34218820 - 34218741
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcat 324  Q
    ||||||||||||||||   | ||||||||||||||||||| ||| ||||  ||| |||||||||| |  ||||||||||||||    
T  34218820 tttttaaaaatttgct---aaggagagatgttcaaattacggaatattgtaattcttcataaattcgaaaacgaaggtcgcat 34218741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 22721165 - 22721094
Alignment:
Q  256 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 327  Q
    |||||| |||||||||||||||||||   ||||||||||| ||| | |||||| ||||| |||| |||||||    
T  22721165 ctctaaaggagagatgttcaaattacgcgacattgccattcttcgttaatttgagaacgtaggttgcataat 22721094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 1363235 - 1363155
Alignment:
Q  229 ttgaattacgtactttttaaaaatttg-ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 308  Q
    ||||||||| || ||||||||| |||  |||||| ||||| ||||||||||||| ||||||||  ||| ||| ||||||||    
T  1363235 ttgaattacatattttttaaaatttttactctaaaggagatatgttcaaattacggaacattgttattcttcgtaaatttg 1363155  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 11168915 - 11168835
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 322  Q
    |||||||||| || ||||||  ||| |||||||||||||| |||||||   ||| ||| ||| |||| |||||||||||||    
T  11168915 tttttaaaaaatttctctaaaagagggatgttcaaattacggaacattcttattcttcgtaattttgagaacgaaggtcgc 11168835  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 11682650 - 11682702
Alignment:
Q  373 cataacaattattgtcattacatacataatgtactgcagcataaatatagatg 425  Q
    ||||| || |||||||||| |||||||||||||||||| || | |||||||||    
T  11682650 cataataactattgtcatttcatacataatgtactgcaacacacatatagatg 11682702  T

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Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 25350576 - 25350714
Alignment:
Q  287 attgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattg 386  Q
    |||| |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||||||| ||||    
T  25350576 attgtcattcttcgtaaatttgagaacgaaggacgcataatccgaatatttgtgatgcatggtctaaggcatgacataaaaaataacataacaatcattg 25350675  T
Q  387 tcattacatacataatgtactgcagcataaatatagatg 425  Q
    | |||||||| |||||||||| |||||||||||||||||    
T  25350676 ttattacatagataatgtactacagcataaatatagatg 25350714  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 25356270 - 25356408
Alignment:
Q  287 attgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattg 386  Q
    |||| |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||||||| ||||    
T  25356270 attgtcattcttcgtaaatttgagaacgaaggacgcataatccgaatatttgtgatgcatggtctaaggcatgacataaaaaataacataacaatcattg 25356369  T
Q  387 tcattacatacataatgtactgcagcataaatatagatg 425  Q
    | |||||||| |||||||||| |||||||||||||||||    
T  25356370 ttattacatagataatgtactacagcataaatatagatg 25356408  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 33097879 - 33097944
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaattt 307  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||| |||| ||| |||||||    
T  33097879 ttttaaaaaatttgctctaaaggagagatgttcaaattacggaacattgtcattcttcgtaaattt 33097944  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 232 - 327
Target Start/End: Complemental strand, 25731139 - 25731043
Alignment:
Q  232 aattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 327  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||||||||||   |||||| || | ||| |||||||| |||||||||| |||||||    
T  25731139 aattacgtattttttaaaaaaattgctctaaaggagagatgttcaaattacgcgacattgtcagtcttcgtaaatttgagaacgaaggttgcataat 25731043  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 31299477 - 31299417
Alignment:
Q  247 aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaattt 307  Q
    ||||||||| ||||| ||||||||||| ||||||| |||||||| |||| |||||||||||    
T  31299477 aaaaatttgttctaaaggagagatgttaaaattacggaacattgtcattcttcataaattt 31299417  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 33105358 - 33105296
Alignment:
Q  229 ttgaattacgtacttttt-aaaaatttgctctaatggagagatgttcaaattacagaacattg 290  Q
    |||||||||||| ||||| |||||||||||| ||  |||||||||||||||||| ||||||||    
T  33105358 ttgaattacgtatttttttaaaaatttgctccaaaagagagatgttcaaattacggaacattg 33105296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 4478967 - 4479019
Alignment:
Q  256 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 308  Q
    |||||| |||||||| |||||||||||||||||||| | | ||| ||||||||    
T  4478967 ctctaaaggagagatattcaaattacagaacattgctaatcttcgtaaatttg 4479019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 21895159 - 21895080
Alignment:
Q  231 gaattacgtactttttaaaaa--tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 308  Q
    ||||||| || ||||||||||  ||| |||||| ||||| ||||||||||||| ||||||| | ||| ||| ||||||||    
T  21895159 gaattacatattttttaaaaaattttactctaaaggagatatgttcaaattacggaacattactattcttcgtaaatttg 21895080  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 230 - 339
Target Start/End: Original strand, 25123459 - 25123571
Alignment:
Q  230 tgaattacgtacttttt---aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataa 326  Q
    ||||||||||| |||||   |||||||||||| ||  |||||||||||||||||| |||||||| |||| ||| |||| ||| |||||||||| ||||||    
T  25123459 tgaattacgtatttttttaaaaaaatttgctccaaatgagagatgttcaaattacggaacattgtcattcttcgtaaacttgagaacgaaggttgcataa 25123558  T
Q  327 tccgaatatttgt 339  Q
    |||||| ||||||    
T  25123559 tccgaacatttgt 25123571  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 320
Target Start/End: Original strand, 45003691 - 45003783
Alignment:
Q  229 ttgaattacgtacttttta-aaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 320  Q
    |||||||||||| |||||  |||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  45003691 ttgaattacgtattttttttaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 45003783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 15084343 - 15084409
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 308  Q
    ||||||||| ||| |||||| ||||| ||||||||||||| ||||||||| ||| ||| ||||||||    
T  15084343 tttttaaaattttactctaaaggagatatgttcaaattacggaacattgctattcttcgtaaatttg 15084409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 44800628 - 44800576
Alignment:
Q  267 agatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggt 319  Q
    |||||||||||||||  |||||||| ||| ||| |||||||| ||||||||||    
T  44800628 agatgttcaaattacgaaacattgctattcttcgtaaatttgagaacgaaggt 44800576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 5483046 - 5482954
Alignment:
Q  229 ttgaattacgtacttttt-aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 320  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  5483046 ttgaattacgtatttttttaaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 5482954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 1694903 - 1694811
Alignment:
Q  229 ttgaattacgta-ctttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 320  Q
    |||||||||| | ||||| ||||| ||||||||| ||||| |||||||||| || ||||||||| ||| ||| |||||||| |||||||||||    
T  1694903 ttgaattacgcatcttttaaaaaaattgctctaaaggagatatgttcaaatcacggaacattgctattcttcgtaaatttgagaacgaaggtc 1694811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 36678774 - 36678851
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 321  Q
    ||||||||||||| ||||||   ||||||||| |||||||| |||||||| ||||||| |||||||| ||||||||||||    
T  36678774 tttttaaaaatttactctaaa--agagatgtttaaattacaaaacattgctatttttcgtaaatttgagaacgaaggtcg 36678851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 1967467 - 1967531
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatt 306  Q
    |||||||||||||||| |||  |||| ||||||||||||| |||||||| |||| ||| ||||||    
T  1967467 tttttaaaaatttgctttaaaagagaaatgttcaaattacggaacattgtcattcttcgtaaatt 1967531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 29693400 - 29693301
Alignment:
Q  229 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 327  Q
    |||||||||||| |||||||||| |||| ||||| | |||||||||||||||||   ||||||||||| ||| |||||||| |||||||||| |||||||    
T  29693400 ttgaattacgtattttttaaaaaatttgttctaaagaagagatgttcaaattacgcgacattgccattcttcgtaaatttgagaacgaaggttgcataat 29693301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 52037420 - 52037514
Alignment:
Q  229 ttgaattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 322  Q
    |||||||| ||| ||||||||||  || |||||| ||||||||||||||||||| ||||||||| ||| ||| ||| |||| |||||||||||||    
T  52037420 ttgaattatgtattttttaaaaaaattcctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgc 52037514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 13624309 - 13624230
Alignment:
Q  242 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 322  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||| | ||| ||| ||| |||| |||||||||||||    
T  13624309 tttttaaaaattt-ctctaaaggagagatgttcaaattacggaacattcctattcttcgtaattttgagaacgaaggtcgc 13624230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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