View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6518_high_9 (Length: 471)
Name: NF6518_high_9
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 33956721 - 33956261
Alignment:
| Q |
1 |
aacattgcactgttctttagcacattctatttatatacttagcatgtgacttta-cagtccatat----ctaaattttctagctcnnnnnnnnaattcct |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
33956721 |
aacattgcactgttctttagcacattctatttatatacttagcatgtgactttagcagtccatatatatctaaattttctagctcttttctttaattcct |
33956622 |
T |
|
| Q |
96 |
gctgctgcaactgctactagtactactactacatgatgaatatgaaacctttaatagtaccagctggtattatgaatacccttggtttagtggtactgta |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33956621 |
gctgctgcaactgctactagtactactactacatgatgaatatgaaacctttaatagtaccagctggtattatgaataccctttgtttagtggtactgta |
33956522 |
T |
|
| Q |
196 |
ttgttcaattattattacaaataattcagttagtggttcaaggaagtgtgaattcccagcaatattcaactttggtgactcaaattcagacactggaggt |
295 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33956521 |
ttgttcaattattattacagataattcagttagtggttcaaggaagtgtgaattcccagcaatattcaactttggtgactcaaattcagacactggaggt |
33956422 |
T |
|
| Q |
296 |
ctttctgctgcctttggacaacctggctatccttatggagagtccttctttcatcaccctgttggtcgctactgtgatggtcgtcttcttgttgatttca |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33956421 |
ctttctgctgcctttggacaacctggctatccttatggagagtccttctttcatcaccctgttggtcgctactgtgatggtcgtcttcttgttgatttca |
33956322 |
T |
|
| Q |
396 |
tcggtactactaactagttccattattcatatttactttcttttcattctttctgtgtgtt |
456 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33956321 |
ttggtactactaactagttccattattcatatttactttcttttcattctttctgtgtgtt |
33956261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 11752229 - 11752266
Alignment:
| Q |
254 |
gcaatattcaactttggtgactcaaattcagacactgg |
291 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
11752229 |
gcaatatacaactttggagactcaaattcagacactgg |
11752266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 37439286 - 37439351
Alignment:
| Q |
251 |
ccagcaatattcaactttggtgactcaaattcagacactggaggtctttctgctgcctttggacaa |
316 |
Q |
| |
|
|||||||||||||||||||| || |||||||| || ||||| ||||| || ||||| ||||||||| |
|
|
| T |
37439286 |
ccagcaatattcaactttggagattcaaattctgatactggtggtctctcagctgcttttggacaa |
37439351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 3600518 - 3600561
Alignment:
| Q |
250 |
cccagcaatattcaactttggtgactcaaattcagacactggag |
293 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
3600518 |
cccagcaatatacaactttggtgactccaattcagatactggag |
3600561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 14339385 - 14339428
Alignment:
| Q |
250 |
cccagcaatattcaactttggtgactcaaattcagacactggag |
293 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
14339385 |
cccagcaatatacaactttggtgactccaattcagatactggag |
14339428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University