View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_low_15 (Length: 434)

Name: NF6518_low_15
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_low_15
NF6518_low_15
[»] chr3 (3 HSPs)
chr3 (15-123)||(46642150-46642255)
chr3 (289-328)||(11303450-11303489)
chr3 (291-328)||(16827882-16827919)
[»] scaffold0403 (1 HSPs)
scaffold0403 (291-328)||(3606-3643)
[»] chr8 (4 HSPs)
chr8 (291-328)||(23655777-23655814)
chr8 (291-328)||(20009813-20009850)
chr8 (291-328)||(21841267-21841304)
chr8 (291-328)||(22371790-22371827)
[»] chr4 (2 HSPs)
chr4 (311-344)||(45175456-45175489)
chr4 (291-328)||(15078419-15078456)
[»] scaffold0298 (1 HSPs)
scaffold0298 (289-328)||(20798-20837)
[»] scaffold0261 (2 HSPs)
scaffold0261 (289-328)||(14649-14688)
scaffold0261 (289-328)||(22828-22867)
[»] chr7 (1 HSPs)
chr7 (289-328)||(15102039-15102078)
[»] scaffold0165 (1 HSPs)
scaffold0165 (291-328)||(5245-5282)
[»] scaffold0149 (2 HSPs)
scaffold0149 (291-328)||(6690-6727)
scaffold0149 (291-328)||(11121-11158)
[»] scaffold0108 (1 HSPs)
scaffold0108 (291-328)||(47939-47976)
[»] scaffold0102 (1 HSPs)
scaffold0102 (291-328)||(40553-40590)
[»] scaffold0026 (1 HSPs)
scaffold0026 (291-328)||(28872-28909)
[»] chr5 (1 HSPs)
chr5 (291-328)||(21890392-21890429)
[»] chr2 (2 HSPs)
chr2 (291-328)||(21125150-21125187)
chr2 (376-416)||(17854391-17854431)


Alignment Details
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 46642150 - 46642255
Alignment:
Q  15 tattttaaaagcctcatgtgcataat---gattcaagaagagactcaaactcaaacttgacaaaaattgaagtgtcatcatgcactcaagttgataattg 111  Q
    |||||||||||||||| ||| |||||   |||||||||||||||||      |||||||||||  | |||||||||||||| ||||||||||||||||||    
T  46642150 tattttaaaagcctcaagtgaataataatgattcaagaagagactc------aaacttgacaaggaatgaagtgtcatcatacactcaagttgataattg 46642243  T
Q  112 attcatttactt 123  Q
    ||||||||||||    
T  46642244 attcatttactt 46642255  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 11303450 - 11303489
Alignment:
Q  289 tggatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  11303450 tggatgtgccggagtggaagtgggacaacatttctatgga 11303489  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 16827882 - 16827919
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  16827882 gatgtgccagagtggaagtgggacaacatttccatgga 16827919  T

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Target: scaffold0403 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0403
Description:

Target: scaffold0403; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 3643 - 3606
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  3643 gatgtgccggagtggaagtgggacaacatttccatgga 3606  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 23655814 - 23655777
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  23655814 gatgtgccggagtggaagtgggacaacatttccatgga 23655777  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 20009813 - 20009850
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  20009813 gatgtgccagagtggaagtgggacaacatttccatgga 20009850  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 21841304 - 21841267
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  21841304 gatgtgccagagtggaagtgggacaacatttccatgga 21841267  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 22371827 - 22371790
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  22371827 gatgtgcctgagtggaagtgggacaacatttccatgga 22371790  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 344
Target Start/End: Complemental strand, 45175489 - 45175456
Alignment:
Q  311 ggacaacatttccatggacttcgttggtgctacc 344  Q
    ||||||||||||||||||||||||||||||||||    
T  45175489 ggacaacatttccatggacttcgttggtgctacc 45175456  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 15078456 - 15078419
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  15078456 gatgtgccagagtggaagtgggacaacatttccatgga 15078419  T

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Target: scaffold0298 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0298
Description:

Target: scaffold0298; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Complemental strand, 20837 - 20798
Alignment:
Q  289 tggatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  20837 tggatgtgccggagtggaagtgggacaacatttctatgga 20798  T

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Target: scaffold0261 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 14649 - 14688
Alignment:
Q  289 tggatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  14649 tggatgtgccggagtggaagtgggacaacatttctatgga 14688  T

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Target: scaffold0261; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 22828 - 22867
Alignment:
Q  289 tggatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  22828 tggatgtgccggagtggaagtgggacaacatttctatgga 22867  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 328
Target Start/End: Original strand, 15102039 - 15102078
Alignment:
Q  289 tggatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  15102039 tggatgtgccggagtggaagtgggacaacatttctatgga 15102078  T

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Target: scaffold0165 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 5282 - 5245
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  5282 gatgtgccatagtggaagtgggacaacatctccatgga 5245  T

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Target: scaffold0149 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 6690 - 6727
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  6690 gatgtgccggagtggaagtgggacagcatttccatgga 6727  T

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Target: scaffold0149; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 11121 - 11158
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  11121 gatgtgccggagtggaagtgggacagcatttccatgga 11158  T

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Target: scaffold0108 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 47976 - 47939
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  47976 gatgtgccagagtggaagtgggacaacatttccatgga 47939  T

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Target: scaffold0102 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 40590 - 40553
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  40590 gatgtgccagagtggaagtgggacaacatttccatgga 40553  T

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Target: scaffold0026 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 28909 - 28872
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  28909 gatgtgccagagtggaagtgggacaacatttccatgga 28872  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 21890392 - 21890429
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  21890392 gatgtgccagagtggaagtgggacaacatttccatgga 21890429  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 328
Target Start/End: Original strand, 21125150 - 21125187
Alignment:
Q  291 gatgtgccgtagtggaagtgggacaacatttccatgga 328  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  21125150 gatgtgccagagtggaagtgggacaacatttccatgga 21125187  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 17854431 - 17854391
Alignment:
Q  376 ctaccaaagactcagagaaagtttgactctatatgggtgat 416  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  17854431 ctaccaaaaactcagaggaagtttgactctatatggatgat 17854391  T

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