View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6518_low_25 (Length: 381)
Name: NF6518_low_25
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 33115748 - 33116099
Alignment:
| Q |
11 |
cagagacaaggagggaatgattttggtttgtttacaaaaaggtttcttcgccgccatggacttcacttgcttggaactgctatgacttggttcttgttgg |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115748 |
cagagacaaggaaggaatgattttggtttgtttacaaaaaggtttcttcgccgccatggacttcacttgcttggaactgctatgacttggttcttgttgg |
33115847 |
T |
|
| Q |
111 |
atattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccctcgaagaggttta |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115848 |
atattgcttattatagtcaaaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccctcgaagaggttta |
33115947 |
T |
|
| Q |
211 |
caagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33115948 |
caagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatc |
33116047 |
T |
|
| Q |
311 |
caattgatgggatttttcttcatgaccgttttcatgtttggattggccattc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33116048 |
caattgatgggatttttcttcatgaccgttttcatgtttggattggccattc |
33116099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 110 - 350
Target Start/End: Complemental strand, 30620184 - 30619944
Alignment:
| Q |
110 |
gatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccctcgaagaggttt |
209 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| || ||||| |||||||||||||| |||||||| || || || |||| ||| || |||||||||| |
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|
| T |
30620184 |
gatattgcattttacagtcagaatcttttccaaaaggatatcttcagtgcaattggttggattccgtctgcaaagacgatgaatgcacttgaagaggttt |
30620085 |
T |
|
| Q |
210 |
acaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaat |
309 |
Q |
| |
|
| || ||||| || || || ||||| || ||| | |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || || || |
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| T |
30620084 |
ataaaattgcgagggcgcaaacacttattgcattatgcagtacagttcctggttactggttcacagttgcattcattgatagaattggaaggttcactat |
30619985 |
T |
|
| Q |
310 |
ccaattgatgggatttttcttcatgaccgttttcatgtttg |
350 |
Q |
| |
|
|| || |||||||||||||| ||||| ||||| ||||||| |
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| T |
30619984 |
tcagttaatgggatttttctttatgacagtttttatgtttg |
30619944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 350
Target Start/End: Complemental strand, 30615292 - 30615190
Alignment:
| Q |
248 |
agtactgttcctggttactggttcacagtggcactcattgatagaattggaagatttacaatccaattgatgggatttttcttcatgaccgttttcatgt |
347 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || || || || || |||||||| ||||| ||||| ||||| |||| |
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|
| T |
30615292 |
agtacagttcctggttactggttcacagtggcactcattgatagaatgggaaggttcactattcagttaatgggattcttctttatgacagtttttatgt |
30615193 |
T |
|
| Q |
348 |
ttg |
350 |
Q |
| |
|
||| |
|
|
| T |
30615192 |
ttg |
30615190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 350
Target Start/End: Original strand, 16184694 - 16184946
Alignment:
| Q |
98 |
tggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccc |
197 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| || || ||||| || |||||||||||||| || || ||| |||| ||| |
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|
| T |
16184694 |
tggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaattggatggatacctccggcaaaagaaatgaatgcaa |
16184793 |
T |
|
| Q |
198 |
tcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaattgg |
297 |
Q |
| |
|
| | ||||||||||||||||| |||||||| ||||| || || | |||||||||||||| |||||||||||||| || ||| | || ||| || || |
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|
| T |
16184794 |
ttcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggttcacggtagcatttatcgatcacatggg |
16184893 |
T |
|
| Q |
298 |
aagatttacaatccaattgatgggatttttcttcatgaccgttttcatgtttg |
350 |
Q |
| |
|
| || | || ||| |||||||||| ||||||||||| ||||||||||||| |
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|
| T |
16184894 |
tcgtttcgctattcaaatgatgggattcttcttcatgactgttttcatgtttg |
16184946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 350
Target Start/End: Complemental strand, 16174671 - 16174416
Alignment:
| Q |
95 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
194 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||| || || ||||| || ||||| |||||||| || || ||| |||| || |
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|
| T |
16174671 |
acttggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaatcggatggatccctccggcaaaagaaatgaatg |
16174572 |
T |
|
| Q |
195 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaat |
294 |
Q |
| |
|
| | | ||||||||||||||||| |||||||| ||||| || || | |||||||||||||| || |||||||||||||| ||| | || ||| || |
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|
| T |
16174571 |
caattcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggctactggttcacagtcgcatttatcgatcacat |
16174472 |
T |
|
| Q |
295 |
tggaagatttacaatccaattgatgggatttttcttcatgaccgttttcatgtttg |
350 |
Q |
| |
|
|| | || | || ||| |||||||||| ||||||||||| ||||||||||||| |
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|
| T |
16174471 |
gggtcgtttcgctattcaaatgatgggattcttcttcatgactgttttcatgtttg |
16174416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 98 - 276
Target Start/End: Original strand, 16224084 - 16224262
Alignment:
| Q |
98 |
tggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtgccc |
197 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| || || ||||| || ||||| |||||||| || || ||| |||| ||| |
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|
| T |
16224084 |
tggtttttgttggatattgctttctatagtcagaatcttttccaaaaggacatttttagcgcaatcggatggatccctccggcaaaagaaatgaatgcaa |
16224183 |
T |
|
| Q |
198 |
tcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagt |
276 |
Q |
| |
|
| | ||||||||||||||||| |||||||| ||||| || || | |||||||||||||| ||||||||||||||||| |
|
|
| T |
16224184 |
ttcatgaggtttacaagattgcaagagcacaaacacttattgcgttgtgcagtactgttccgggttactggttcacagt |
16224262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 350
Target Start/End: Original strand, 33109791 - 33110046
Alignment:
| Q |
95 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
194 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||||||||| || || |||||||||| || ||||| ||||| || ||| ||| |||| || |
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|
| T |
33109791 |
acttggttcttgttggacattgctttctacagtcagaatctttttcaaaaggatattttcaccgcgattgggtggatccctccagcaaaagaaatgaatg |
33109890 |
T |
|
| Q |
195 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaat |
294 |
Q |
| |
|
| | | || | || | |||||| |||||||| || || |||||| | |||||||| || || ||||||||||| ||||||||| | || ||| || |
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|
| T |
33109891 |
caattaacgaactgtataggattgcaagagcacaaacccttatagcattgtgcagtacagtgccaggttactggtttacagtggcatttatcgattacat |
33109990 |
T |
|
| Q |
295 |
tggaagatttacaatccaattgatgggatttttcttcatgaccgttttcatgtttg |
350 |
Q |
| |
|
|| | ||| | |||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
33109991 |
gggtcgttttgcgatccaattgatgggtttcttcttcatgaccgtcttcatgtttg |
33110046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 95 - 350
Target Start/End: Original strand, 38893873 - 38894128
Alignment:
| Q |
95 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
194 |
Q |
| |
|
|||||||||||| | ||||| || | ||| ||||| ||||| |||||||| ||||| |||||||||||||| ||||| ||| || ||||||||| || |
|
|
| T |
38893873 |
acttggttcttgcttgatatagcattttacagtcaaaatctcttccagaaggatatcttcagtgcaattggttggataccacctgcacaaactatgaatg |
38893972 |
T |
|
| Q |
195 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaat |
294 |
Q |
| |
|
| || || ||||||||||| || || ||||| || ||||| || || || |||||||| ||||| || |||||||| || ||||| |||||||| || || |
|
|
| T |
38893973 |
cacttgaggaggtttacaaaatcgcaagagctcaaacacttattgctctatgcagtacagttccaggctactggtttacggtggctctcattgacaggat |
38894072 |
T |
|
| Q |
295 |
tggaagatttacaatccaattgatgggatttttcttcatgaccgttttcatgtttg |
350 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||| ||||| || |||||||||| |
|
|
| T |
38894073 |
aggaaggtttaaaatccaattgatgggattcttctttatgactgtcttcatgtttg |
38894128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 95 - 350
Target Start/End: Original strand, 38884687 - 38884942
Alignment:
| Q |
95 |
acttggttcttgttggatattgcttattatagtcagaatcttttccagaaagatattttcagtgcaattggatggattccagaagctaaaactatgagtg |
194 |
Q |
| |
|
|||||||||||| | ||||| || | |||||| || ||||| |||||||| ||||||||||| |||||||| ||||| ||| | |||| |||| || |
|
|
| T |
38884687 |
acttggttcttgcttgatatagcattttatagccaaaatctcttccagaaggatattttcagcgcaattggttggataccacctccacaaaccatgaatg |
38884786 |
T |
|
| Q |
195 |
ccctcgaagaggtttacaagattgctagagcacagacactcatagcactttgcagtactgttcctggttactggttcacagtggcactcattgatagaat |
294 |
Q |
| |
|
| || || ||||||||||| |||||| |||| || ||||| || || || |||||||| ||||| ||||| ||||| || ||||| |||| || ||||| |
|
|
| T |
38884787 |
cacttgaggaggtttacaaaattgctcgagctcaaacacttattgctctatgcagtacagttccaggttattggtttaccgtggctttcatagacagaat |
38884886 |
T |
|
| Q |
295 |
tggaagatttacaatccaattgatgggatttttcttcatgaccgttttcatgtttg |
350 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||||| | |||||||||| |
|
|
| T |
38884887 |
aggaagatttaccatccaattgatgggattcttctttatgactgccttcatgtttg |
38884942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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