View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_26 (Length: 370)
Name: NF6518_low_26
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 58 - 298
Target Start/End: Complemental strand, 30788118 - 30787878
Alignment:
| Q |
58 |
gaaaatataacattaaaatttaatatttagatagagtatcaaacttagagttgctccacgagatctaaatttcaatatacattgagaaaaataatttcat |
157 |
Q |
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| T |
30788118 |
gaaaatataacattaaaatttaatatttagatagagtatcaaacttagagttgctccacgagatctaaatttcaatatacattgagaaaaataatttcat |
30788019 |
T |
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| Q |
158 |
gcaaaatgaatacaatatcaatttagtttttgactcttctttcaaattgatcccaaaactattaagttctgttaaaaggcccttaaactattcattcatc |
257 |
Q |
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| T |
30788018 |
ccaaaatgaatacaatatcaatttagtttttgactcttctttcaaattgatcccaaaactattaagttatgttaaaaggcccttaaactattcattcatc |
30787919 |
T |
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| Q |
258 |
taaatatttaactgatgagttaattagcttgtttggatatt |
298 |
Q |
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| T |
30787918 |
taaatatttaactgatcagttaattagcttgtttggatatt |
30787878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Complemental strand, 30823 - 30794
Alignment:
| Q |
306 |
gaaaaatgatatttgtaaaaccattttatg |
335 |
Q |
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| T |
30823 |
gaaaaatgatatttgtaaaaccattttatg |
30794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 37873173 - 37873143
Alignment:
| Q |
309 |
aaatgatatttgtaaaaccattttatgataa |
339 |
Q |
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| T |
37873173 |
aaatgatatttgtaaaaccattttatgataa |
37873143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 340
Target Start/End: Complemental strand, 49699825 - 49699789
Alignment:
| Q |
304 |
atgaaaaatgatatttgtaaaaccattttatgataat |
340 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |
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| T |
49699825 |
atgagaaatgatatttgtacaaccattttatgataat |
49699789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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