View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_31 (Length: 344)
Name: NF6518_low_31
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_31 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 16393 - 16727
Alignment:
| Q |
1 |
caatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacattattactcaacccgattttattttgcagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16393 |
caatccaatttcttattactttcctattcaattccaattgttattacttattatattatatcgctgcacattattactcaacccgattttattttgcagc |
16492 |
T |
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| Q |
101 |
acttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaattgaattgttgttgttggctgttccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16493 |
acttaccaatccaaattccctttattttcaaagttgctgctacgtcccttttctttcttttatttaattaaattgaattgttgttgttggctgttccatt |
16592 |
T |
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| Q |
201 |
gttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctattgtttggtgtttggtgttc |
300 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16593 |
gttgcgggactgagcatataacaattgttattgttgagtacgtgtgccatataatccatatattttcattgtttgcgctactgtttggtgtttggtgttc |
16692 |
T |
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| Q |
301 |
gattccaattgcagttatgtttcttggagtattat |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
16693 |
gattccaattgcagttatgtttcttggagtattat |
16727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 11177573 - 11177266
Alignment:
| Q |
1 |
caatccaatttcttattactttcctattcaattccaattgttattacttcttatattatatcgctgcacattattactcaacccgattttattttgcagc |
100 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177573 |
caatccaatttcttattactttcttactcaattccaattgttattacttattatattatatcgctgcacattattactcaacccgattttattttgcagc |
11177474 |
T |
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| Q |
101 |
acttaccaatccaaattccctttattttcaaaactgctgctacgtcccttttctttcttttatttaattaaattgaattgttgttgttggctgttccatt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177473 |
acttaccaatccaaattccctttattttcaaagctgctgctacgtcccttttctttcttttatttaattaaattgaattgtt------------------ |
11177392 |
T |
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| Q |
201 |
gttgcggggctgagcatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctattgtttggtgtttggtgttc |
300 |
Q |
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||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11177391 |
gttgctgggctgagtatataacaattgttattgctgagtacgtgtgccatataatccatatattttcattgtttgcgctactgtttggtgtttggtgttc |
11177292 |
T |
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| Q |
301 |
gattccaattgcagttatgtttcttg |
326 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
11177291 |
gatttcaattgcagttatgtttcttg |
11177266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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