View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_33 (Length: 332)
Name: NF6518_low_33
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 2740442 - 2740747
Alignment:
| Q |
16 |
atgtgaaatttgaataggcaaacaagatcattcttaatggcttaaggaaagtgagtaaa--tcaatnnnnnnnnttaagtgggtcgaggagcttacgtcg |
113 |
Q |
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| T |
2740442 |
atgtgaaatttgaataggcaaacaagatcattcttaatggcttaaggaaaatgagtagagatcaataaaaaaaattgagtgggtcgaggagcttacgtcg |
2740541 |
T |
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| Q |
114 |
gtcatgtgggcgtaccacgctctgcccagacatacacatatgaattgtttaagaaattcataaatatatagaatgaaattcataattaattcgtctcttg |
213 |
Q |
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| T |
2740542 |
gtcatgtgggcgtaccacgctatgcccagacatacatacatgaattgtttaagaaattcataaatatatagaatgaaattcataattaattcgtctcttg |
2740641 |
T |
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| Q |
214 |
tttaaaacagagccaaacaataaagaaattatattcatgagggaagatgaatgatatatatgtttccattttaagaagtggtttatttaagaaaacgaat |
313 |
Q |
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| T |
2740642 |
tttaaaacagagccaaacaataaagaaattatattcatgagggaagatgaatgatatatgtgtttcgattctaagaaatggtttatttaagaaaacgaat |
2740741 |
T |
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| Q |
314 |
aatatt |
319 |
Q |
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|||||| |
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| T |
2740742 |
aatatt |
2740747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 12850071 - 12850140
Alignment:
| Q |
152 |
tatgaattgtttaagaaattcataaatatatagaatg-aaattcataattaattcgtctcttgtttaaaa |
220 |
Q |
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| T |
12850071 |
tatgaattgtttaagaaattcataattatggggaacgaaaatttataattaattcgtcccttgttgaaaa |
12850140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 18716437 - 18716506
Alignment:
| Q |
152 |
tatgaattgtttaagaaattcataaatatatagaatg-aaattcataattaattcgtctcttgtttaaaa |
220 |
Q |
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| T |
18716437 |
tatgaattgtttaagaaattcataattttggggaatgaaaattcataattaatttgtcactcgtttaaaa |
18716506 |
T |
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