View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_38 (Length: 276)
Name: NF6518_low_38
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 43242905 - 43243158
Alignment:
| Q |
21 |
gtaagcctacttgaacttttatttttattaactttttaaattatgtggttgcagtcggtgtatgaaatgattaagatcaaagatgatgatccagtttgtt |
120 |
Q |
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| T |
43242905 |
gtaagcctacttgaacttttatttttattaactttttaaattatgtggttgcagtcggtgtatgaaatgattaagatcaaagatgatgatccagtttgtt |
43243004 |
T |
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| Q |
121 |
gcatttataacatttcaaaaaataaatgctggcggcatttcttgaaggatgtcaagtctgagagctggcaagaaatgcttgatgtcgtggaggcctctga |
220 |
Q |
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| T |
43243005 |
gcatttataacatttcaaaaaataaatgctggcggcatttcttgaaggatgtcaagtctgagagctggcaagaaatgcttgatgtcgtggaggcctctga |
43243104 |
T |
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| Q |
221 |
aggtggtattggtacattgtatttttggttgcagctgtcatattcttcgacatc |
274 |
Q |
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| T |
43243105 |
aggtggtatcggtacattgtatttttggttgcagctgtcatattcttcgacatc |
43243158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 43234945 - 43235121
Alignment:
| Q |
46 |
tattaactttttaaattatgtggttgcagtcggtgtatgaaatgattaagatcaaagatgatgatccagtttgttgcatttataacatttcaaaaaataa |
145 |
Q |
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| T |
43234945 |
tattaactttttaaattacgtgattgcagtctgtgtatgaaatgattaagatcaaagatgaggatccagtttgctgtagctataacacttcaacaaataa |
43235044 |
T |
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| Q |
146 |
atgctggcggcatttcttgaaggatgtcaagtctgagagctggcaagaaatgcttgatgtcgtggaggcctctgaag |
222 |
Q |
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| T |
43235045 |
atgctggcggcatttcttgaagggtgttaagtttgagagctggaaagaaatgcttgatgtcatgggtgcctctgaag |
43235121 |
T |
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