View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_39 (Length: 271)
Name: NF6518_low_39
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_39 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 259
Target Start/End: Complemental strand, 30654043 - 30653800
Alignment:
| Q |
16 |
cacttaatacaacaacacatcaagctcaatttagcaatgcctctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaagagaaaa |
115 |
Q |
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| T |
30654043 |
cacttaatacaacaacacatcaagctcaatttagcagtgcctctaatttcattttccaaagatcataatcaattttttaaactaaactaaaaaatgcaaa |
30653944 |
T |
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| Q |
116 |
attaaatagaggaaagatggactgatttttggaattaggaatggatttgacaaccaaatatttttggaaaatttccataaacctataatacataatattt |
215 |
Q |
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| T |
30653943 |
attaaatagaggaaagatggactgatttttggaattaggaatggatttgacaaccaaataattttggaaaatatccataaacctatagtacataatattt |
30653844 |
T |
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| Q |
216 |
atttcaagttacacgtgtggcagcatttcatggtaatcaattca |
259 |
Q |
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| T |
30653843 |
atttacagttacacgtgtggcagcatttcatggtaatcaattca |
30653800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 24728133 - 24727940
Alignment:
| Q |
16 |
cacttaatacaacaacacatcaagctcaattta----gcaatgcctctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaagag |
111 |
Q |
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| T |
24728133 |
cacttaatacaacaacacaccaagctcaatttaattagtaatgcttctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaaagg |
24728034 |
T |
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| Q |
112 |
aaaaattaaatagaggaaagatgga-ctgatttttggaattaggaatggatttgacaaccaaatatttttggaaaatttccataaacctataat |
204 |
Q |
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| T |
24728033 |
caatattaaatagaggaaagatgaacctgattgttggaattgggaacggatttgaaaaccaaatatttgtggaaaatgttcatgaacttataat |
24727940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 40058270 - 40058186
Alignment:
| Q |
45 |
tttagcaatgcctctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaagagaaaaattaaatagaggaaa |
130 |
Q |
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| T |
40058270 |
tttagcaatggttctaacttcattttctacactgcataatcaattttttaa-ctaaactaaaaaaggtgaaattaaatagaggaaa |
40058186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 7824 - 7880
Alignment:
| Q |
52 |
atgcctctaacttcattttccaaagaacataatcaattttttaaactaaactaaaaa |
108 |
Q |
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| T |
7824 |
atgcttctaacttcattctctatagaatataatcaatttttaagactaaactaaaaa |
7880 |
T |
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