View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_low_41 (Length: 259)

Name: NF6518_low_41
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_low_41
NF6518_low_41
[»] chr2 (2 HSPs)
chr2 (1-238)||(29910950-29911189)
chr2 (5-238)||(18578313-18578546)
[»] chr8 (3 HSPs)
chr8 (1-238)||(9419043-9419281)
chr8 (4-75)||(24096577-24096647)
chr8 (59-234)||(24096668-24096845)
[»] chr3 (1 HSPs)
chr3 (12-51)||(7784534-7784573)
[»] chr4 (1 HSPs)
chr4 (1-88)||(21679085-21679175)
[»] chr7 (1 HSPs)
chr7 (198-238)||(9736408-9736449)
[»] chr5 (2 HSPs)
chr5 (198-238)||(11222862-11222903)
chr5 (198-238)||(42733159-42733200)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 29911189 - 29910950
Alignment:
Q  1 agagttggagtttgtttgtatgtgaagagtttttgaaagtagtgatgatttcacttgaaagatgatttctttgttgtaaaaactcttggtttttgtcttc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||    
T  29911189 agagttggagtttgtttgtatgtgaaaagtttttgaaagtagtgatgatttcacttgagagatgatttcattgttgtaaaaattcatggtttttgtcttc 29911090  T
Q  101 aaagccttcctctatttataggaacgagagacttgttgcccacttaat-aaatcgctgctgggagacatttttctatgtaacatgtacttcatttagttg 199  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||| | || |||||||||||||||||||||||||||  ||| ||||||||    
T  29911089 aaagccttcctctatttataggaatgagagacttgttgcccacttaataaaatagttgttgggagacatttttctatgtaacatgtgtttcctttagttg 29910990  T
Q  200 cttggagag-aagcatgaaattttgcacttgcagaacgtt 238  Q
    ||||||||| ||||||||||||||||| || |||||||||    
T  29910989 cttggagagaaagcatgaaattttgcattttcagaacgtt 29910950  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 18578546 - 18578313
Alignment:
Q  5 ttggagtttgtttgtatgtgaagagtttttgaaagtagtgatgatttcacttgaaagatgatttctttgttgtaaaaactcttggtttttgtcttcaaag 104  Q
    |||||||||||| || |||||||||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||||| | |||   ||| |||    
T  18578546 ttggagtttgtt-gtttgtgaagagtttttgagaatagtgatgatttcacttgagagatga-ttctttgttgtaaaaactcttgctatttccattc-aag 18578450  T
Q  105 ccttcctctatttatagga-acgagagacttgttgcccactt-aataaatcgctgctgggagacatttttctatgtaacatgtacttcatttagttgctt 202  Q
      ||||||||||||||| | | | || ||||| || |||||| || |||| | || ||| | ||||||| | ||| | ||||| |||| |||||||||||    
T  18578449 tgttcctctatttatagaagatgtgaaacttggtgaccacttcaaaaaatagttgttggaacacattttccaatgcagcatgtgcttcctttagttgctt 18578350  T
Q  203 ggagag-aagcatgaaattttgcacttgcagaacgtt 238  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  18578349 ggagagaaagcatgaaattttgcacttgtagaacgtt 18578313  T

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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9419281 - 9419043
Alignment:
Q  1 agagttggagtttgtttgtatgtgaagagtttttgaaagtagtgatgatttcacttgaaagatgatttctttgttgtaaaaactcttggtttttgtcttc 100  Q
    ||||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| |||| |||||||| |||| |||||| ||| ||||||||||     
T  9419281 agagttgaagtttgtttatatgtgaagagtttttcacagtagtgatgatttcacttgagagattatttctttcttgt-aaaacttttgatttttgtctta 9419183  T
Q  101 aaagccttcctctatttataggaacgagagacttgttgcccacttaat-aaatcgctgctgggagacatttttctatgtaacatgtacttcatttagttg 199  Q
    |||| ||||||||||||||||||| |||||| ||| || |||||| || |||| | || ||||| || |||||| ||||| |||||  ||| ||| ||||    
T  9419182 aaagtcttcctctatttataggaatgagagatttggtgaccacttcataaaatagttgttgggatacgtttttccatgtagcatgtgtttcctttggttg 9419083  T
Q  200 cttggagag-aagcatgaaattttgcacttgcagaacgtt 238  Q
    ||||||||| ||||||||| ||||||||||||| ||||||    
T  9419082 cttggagagaaagcatgaatttttgcacttgcaaaacgtt 9419043  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 24096577 - 24096647
Alignment:
Q  4 gttggagtttgtttgtatgtgaagagtttttgaaagtagtgatgatttcacttgaaagatgatttctttgtt 75  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  24096577 gttggagtttgtttgtatgtgaagagttttt-aaagtagtgatgatttcgcttgagagatgatttctttgtt 24096647  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 234
Target Start/End: Original strand, 24096668 - 24096845
Alignment:
Q  59 aagatgatttctttgttgtaaaaactcttggtttttgtcttcaaagccttcctctatttatagga-acgagagacttgttgcccacttaataaa-tcgct 156  Q
    |||||||||||||| || |||||||||||| | ||| | ||||| |  ||||||||||||||| | | | || ||||| || |||||| ||||| | | |    
T  24096668 aagatgatttcttttttttaaaaactcttgatatttctattcaa-gtgttcctctatttatagaagatgtgaaacttggtgaccacttcataaaatagtt 24096766  T
Q  157 gctgggagacatttttctatgtaacatgtacttcatttagttgcttggagag-aagcatgaaattttgcacttgcagaa 234  Q
    | |||||  | |||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  24096767 gttgggactcgtttttctatgtagcatgtgcttcctttagttgcttggagagaaagcatgaaattttgcacttgtagaa 24096845  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 7784534 - 7784573
Alignment:
Q  12 ttgtttgtatgtgaagagtttttgaaagtagtgatgattt 51  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7784534 ttgtttgtatgtgaagagtttttgaaagtagtgatgattt 7784573  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 21679085 - 21679175
Alignment:
Q  1 agagttggagtttgtttgtatgtgaagagtttttgaaagtagtgatgattt-cacttgaaaga--tgatttctttgttgtaaaaactcttg 88  Q
    |||| |||||||||||||| ||| | ||||||||||  |||||||| |||| | ||||| |||  ||||||||||||||||||||||||||    
T  21679085 agagctggagtttgtttgtttgtaatgagtttttgagtgtagtgataattttcccttgagagagatgatttctttgttgtaaaaactcttg 21679175  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 9736449 - 9736408
Alignment:
Q  198 tgcttggagagaa-gcatgaaattttgcacttgcagaacgtt 238  Q
    ||||||||||||| |||||||||||| |||||||||||||||    
T  9736449 tgcttggagagaaagcatgaaatttttcacttgcagaacgtt 9736408  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 11222903 - 11222862
Alignment:
Q  198 tgcttggagagaag-catgaaattttgcacttgcagaacgtt 238  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  11222903 tgcttggagagaaaacatgaaattttgcacttgcagaacgtt 11222862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 42733159 - 42733200
Alignment:
Q  198 tgcttggagagaag-catgaaattttgcacttgcagaacgtt 238  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  42733159 tgcttggagagaaaacatgaaattttgcacttgcagaacgtt 42733200  T

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