View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_44 (Length: 251)
Name: NF6518_low_44
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 31206463 - 31206234
Alignment:
| Q |
16 |
atatggttgggctgccttttgtggtatatggctaagcaaatatgcttgtggcaagtgcttaaatgtaagtataataatgtttgcaatttggttcttattt |
115 |
Q |
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| T |
31206463 |
atatggttgggctgccttttgtggtatatggctaagcaaatatgcttgtggcaagtgcttaaatgtaagtataataatgtttgcaatttggttcttattt |
31206364 |
T |
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| Q |
116 |
tctttatgccatacaacccttgttggaatctcacacatcacgggttcaaatatccacatcctaaaacaatttgagaaaattctctcgaaaacaacttctt |
215 |
Q |
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| T |
31206363 |
tctttatgccatacaacccttgttggaatctcacacatcccgggttcaaatatccacatcctaaaacaatttgagaaaattctctcgaaaacaacttttt |
31206264 |
T |
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| Q |
216 |
ttcctccatcaagaggtggaatcgaatctc |
245 |
Q |
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| T |
31206263 |
ttcctccatcgagaggtggaatcgaatctc |
31206234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 31175085 - 31175048
Alignment:
| Q |
51 |
gcaaatatgcttgtggcaagtgcttaaatgtaagtata |
88 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| |
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| T |
31175085 |
gcaaatctgcttgtggcaagtgcttaaatgtatgtata |
31175048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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