View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_47 (Length: 245)
Name: NF6518_low_47
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25372404 - 25372625
Alignment:
| Q |
1 |
tttgaatttggatgcatttaggtatttacatgtatgaaagatatgtgtgttgggaagtccgagtagcgtcggggcgtgaatagtttagacatccatgatc |
100 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |
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| T |
25372404 |
tttgaatttggatgctattaggtacttacatgtatgaaagatatgtgtgttgggaagtccgagtagcgtcgggacgtcaatagattagacatccatgatc |
25372503 |
T |
|
| Q |
101 |
actaagagaccttgacaccatattttgtaccccaaaccacaaggcattagatgtatagggcatatttcttatatatctaatgtttcctcttgataggcgt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
25372504 |
actaagagaccttgacaccatattttgtaccccaaaccacaaggcattagatgtataagacatatctcttatatatctaatgtttcctcttgataggcgt |
25372603 |
T |
|
| Q |
201 |
gagtcacccacatcactagcct |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
25372604 |
gagtcacccacatcactagcct |
25372625 |
T |
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