View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_48 (Length: 244)
Name: NF6518_low_48
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_48 |
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| [»] scaffold0257 (1 HSPs) |
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Alignment Details
Target: scaffold0257 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 24699 - 24480
Alignment:
| Q |
17 |
ataccaaggtgtaaaatcggtgtttgtgtatgtcttccttaactcaagagtacacaaatgccttgctatctcatgtgctatcatttagttttatttttga |
116 |
Q |
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| T |
24699 |
ataccaaggtgtaaaatcggtgtttgtgtatgtcttccttaactcaagaatacacaaatgccttgctatctcatgtgctataatttagttttatttttga |
24600 |
T |
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| Q |
117 |
caccatttgtttttcctttctaaagtttatgaaactcttagttatggctttgtactataatatgatggtaattgattgaaataagactgcaagtaatatt |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24599 |
caccgtttgtttttcctttctaaagtttatgaaactcttagttatggctttgtactataatatgatggtaattgattgaaataagactgcaagtaatatt |
24500 |
T |
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| Q |
217 |
atctagattatattcttctc |
236 |
Q |
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|||||||||||||||||||| |
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| T |
24499 |
atctagattatattcttctc |
24480 |
T |
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