View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_49 (Length: 240)
Name: NF6518_low_49
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 40945070 - 40945284
Alignment:
| Q |
9 |
gattattctatataaactgttatctagtgttgcagttgtcataagttaacaatcgttcatcctattcccacatattaagaattgattgttaatttgagaa |
108 |
Q |
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| T |
40945070 |
gattattctatataaactgttatctagtgttgcagttgtcataagttaacaatcgttcatcctattcccacatattaagaattgattgttaatttgagaa |
40945169 |
T |
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| Q |
109 |
aatactaaggtttgtgatcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaa |
208 |
Q |
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| T |
40945170 |
aatactaaggtttgtgatcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaa |
40945269 |
T |
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| Q |
209 |
tgtggtggtaatatt |
223 |
Q |
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| T |
40945270 |
tgtggtggtaatatt |
40945284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 40953323 - 40953412
Alignment:
| Q |
128 |
atggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggt |
217 |
Q |
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| T |
40953323 |
atggcaactagatgcttaagctttgtaacattagttattactacaagcatcttagtgttaggaatttctggtcaatttgaatgtggtggt |
40953412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 40959803 - 40959895
Alignment:
| Q |
125 |
atcatggcaactagatacttaggctttgcaacagttgtgcttactgcaagcattttagtgataggaatttatgctcaagttgaatgtggtggt |
217 |
Q |
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| T |
40959803 |
atcatggcaactagatacttacactttacaacattagttcttgccgtaagcatcttagtggtaggaatttctggtcaatttgaatgtggtggt |
40959895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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