View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_5 (Length: 550)
Name: NF6518_low_5
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 25 - 534
Target Start/End: Complemental strand, 13972755 - 13972246
Alignment:
| Q |
25 |
cttatttggtcatatgatatagatgatgtgctacctgcnnnnnnnnnnttaacataggatgaatagatcaagattgtaatcaatgattttnnnnnnnnnn |
124 |
Q |
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| T |
13972755 |
cttatttggtcatatgatatagatgatgtgctacctgcaaaaaaaaaattaacataggatgaatagatcaagattgtaatcaatgattttaaaaaaataa |
13972656 |
T |
|
| Q |
125 |
nnnnnnnnnncatatgtctccaatatcaagattatttagtataactctgcacacgattgcgagtgaggtcgtatcaccttgactacagttctccgcaata |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13972655 |
aaataaaaaacatatgtctccaatatcaagattatttagtataactctgcacacaattgcgagtgaggtcgtatcaccttgactacagttctccgcaata |
13972556 |
T |
|
| Q |
225 |
ttaaaaattacgataaagtcgagattgtgtatgtcatttaaaaccttactggatagttaaaatctaaattaacattttcaatctttcatatgtttatgac |
324 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13972555 |
ttaaaaattgcgataaagtcgagattgtgtatgtcatttaaaaccttactggatagttaaaatctaaattaacattttcaatctttcatatgtttatgac |
13972456 |
T |
|
| Q |
325 |
atgcaagactgttgaattgtctaataattttttcaaacttctcatagaagtgcattagtatccagagcttaatttgaaaattaaatgcacaaagtccata |
424 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13972455 |
atgcaagactgttgaattgtctaataattttttcaaacttctcatagaagtgcattagtatccagagcttaatttgaaaactaaatgcacaaagtccata |
13972356 |
T |
|
| Q |
425 |
gtttctctttaattgcatctagtactatatattattttcatgcatttactttgctacatttgcatctagtgccataagtaaactatttatgaggtcacaa |
524 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13972355 |
gtttctctttaattgcatctagtactatatattattttcatgcatttactttgctacatttgcatctagtgccataagtaaactatttatgaggtcaaaa |
13972256 |
T |
|
| Q |
525 |
cacataatct |
534 |
Q |
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|||||||||| |
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| T |
13972255 |
cacataatct |
13972246 |
T |
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