View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_59 (Length: 205)
Name: NF6518_low_59
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 8e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 45732241 - 45732059
Alignment:
| Q |
16 |
gttgagactgtagatacaagccatttcattactccagaaaatattgaaagactaaatcaggcaaaagaagcagatagagtccaggtatataactttcata |
115 |
Q |
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| T |
45732241 |
gttgagactgtagatacaagccatttcattactccagaaaatattgaaagactaaatcaggcaaaagaagcagatagggtccaggtatataactttcata |
45732142 |
T |
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| Q |
116 |
gtactagtagcatatttatgttacattagtcacctgatgtgttttttcccttctcctatcatattgaataacttatattcttc |
198 |
Q |
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| T |
45732141 |
gtactagtagcatatttatgttacattagtcacctgatgtgttttttcccttctcctatcatattgaataacttatattcttc |
45732059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 45737571 - 45737393
Alignment:
| Q |
16 |
gttgagactgtagatacaagccatttcattactccagaaaatattgaaagactaaatcaggcaaaagaagcagatagagtccaggtatataactttcata |
115 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| || |
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| T |
45737571 |
gttgagactctacatacaagccatttcattactccagaaaatattgaaaggctaaatcaggcaaaagaagcaaatagggtccaggtatataactttcgta |
45737472 |
T |
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| Q |
116 |
gtactagtagcatatttatgttacattagtcacctgatgtgttttttcccttctcctatcatattgaataacttatatt |
194 |
Q |
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|||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
45737471 |
gtactagtagcatatttatgttacattaatcacctaatgtattttttcccttctcctatgatattgaataacttatatt |
45737393 |
T |
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