View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6518_low_6 (Length: 515)
Name: NF6518_low_6
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6518_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 3544634 - 3544344
Alignment:
| Q |
1 |
tcccttggcttgatgcctcttgcttttgatatcttctttacaaatgatgcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagtt |
100 |
Q |
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| T |
3544634 |
tcccttggcttgatgcctcttgcttttgatatcttctttacaaacgatgcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagtt |
3544535 |
T |
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| Q |
101 |
gtcgctcgctttggccaatcacactcgcataccccatgagacattgaacacataaaacaggatagcgagtagctctgcatgaggacttgatgaactctga |
200 |
Q |
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| T |
3544534 |
gtcgctcgctttggccaatcacactcgcataccccatgagacattgaacacataaaacaggatagcgagtagctctgcatgaggacctgatgaactctga |
3544435 |
T |
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| Q |
201 |
cggggttatagaggattctgcagtgacaagactcatgaagaccagcaaataaaccccggctctagccgccatgtttactagcaatgtagtg |
291 |
Q |
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| T |
3544434 |
cggggttatagaggattctgcagtgacaagactcatgaagaccagcaaataaaccccggctctagccgccatgtttactagcaatatagtg |
3544344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 360 - 503
Target Start/End: Complemental strand, 3544283 - 3544140
Alignment:
| Q |
360 |
ggaaataggactgtagaaagtgggagacatgtactattgtatctatatgtgactgtgaatggattgctaccgtatcccactttctttttnnnnnnnggaa |
459 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3544283 |
ggaaataggactgtaggaagtgggagacatgtattattgtatctatatgtgactgtgaatggattgctaccgtatcccactttcttttttaaaaaaggaa |
3544184 |
T |
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| Q |
460 |
aatattggcaggttatctttaaatttattaatatattcttttga |
503 |
Q |
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| T |
3544183 |
aatattggcaggttatctttaaatttattaatatattcttttga |
3544140 |
T |
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