View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6518_low_8 (Length: 495)

Name: NF6518_low_8
Description: NF6518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6518_low_8
NF6518_low_8
[»] chr5 (3 HSPs)
chr5 (13-477)||(9576219-9576673)
chr5 (302-453)||(42638099-42638250)
chr5 (299-417)||(42630454-42630572)
[»] chr8 (1 HSPs)
chr8 (265-450)||(3368617-3368799)
[»] chr1 (5 HSPs)
chr1 (304-450)||(34287584-34287730)
chr1 (299-394)||(19226212-19226307)
chr1 (302-396)||(361020-361114)
chr1 (349-394)||(19220747-19220792)
chr1 (331-395)||(40399722-40399786)
[»] scaffold0129 (1 HSPs)
scaffold0129 (307-396)||(9590-9679)
[»] chr6 (2 HSPs)
chr6 (304-396)||(287458-287550)
chr6 (310-393)||(21379306-21379389)
[»] chr7 (1 HSPs)
chr7 (349-394)||(25627371-25627416)
[»] chr2 (1 HSPs)
chr2 (304-396)||(16920093-16920185)


Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 477
Target Start/End: Complemental strand, 9576673 - 9576219
Alignment:
Q  13 aatataataactgtaaccaaaagttaggtctaacgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9576673 aatataataactgtaaccaaaagttaggtctaatgatcgcatggtgccatgggagcggaaaaatcagtttaggtttataaattaaacctaataattttgt 9576574  T
Q  113 ttctacaaatccaataatccaattactgcaaaaaagtttttccacagagataacgcttaacaggctttctcaggcttctctcaactcgttccgcttgtct 212  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||    
T  9576573 ttctacaaatccaataatccaattgctgcaaaaaagtttttccacagagataacgcttaacaggctt----------ctctcaactcgttccgcttgtct 9576484  T
Q  213 ttagagtcaagtgtagtgatcaacggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta 312  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9576483 ttagagtcaagtgtagtgatcaatggatgcagcaaatgaaaaggttagtaataatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaatta 9576384  T
Q  313 cctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggaggaatttcttat 412  Q
    ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9576383 cctttcaaatctttgattcgattttgctgtgtacaaaaattatggactctcttgtttgaaaacccttatttcatgagcatgtttaggaggaatttcttat 9576284  T
Q  413 acaaggatcattcttgttataatgatacatctttcctcctatatctttcgtttggtgtcaagggt 477  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  9576283 acaaggatcattcttattacaatgatacatctttcctcctatatcattcgtttggtgtcaagggt 9576219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 302 - 453
Target Start/End: Complemental strand, 42638250 - 42638099
Alignment:
Q  302 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggag 401  Q
    ||||||| || ||||| ||||| |||| ||||||| | ||||| |  ||||| ||| || ||||||| || || |||||||||| || ||||| | | ||    
T  42638250 tgtcaaagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagataatccttatttcaagaccatgtttcgaag 42638151  T
Q  402 gaatttcttatacaaggatcattcttgttataatgatacatctttcctccta 453  Q
     ||||||||||| ||| ||||||||| ||| |||||||||||| || |||||    
T  42638150 aaatttcttatataagaatcattcttattacaatgatacatctctcttccta 42638099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 417
Target Start/End: Complemental strand, 42630572 - 42630454
Alignment:
Q  299 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtatag 398  Q
    ||||||||||| | ||||| ||||||||| |||||||| | ||||| |  ||||||||| |||| |||||| ||||  |||||||||||| ||||| | |    
T  42630572 ttttgtcaaaacttcctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttcatgaacatgtttcg 42630473  T
Q  399 gaggaatttcttatacaag 417  Q
     | ||||||||||| ||||    
T  42630472 aaagaatttcttatccaag 42630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 265 - 450
Target Start/End: Complemental strand, 3368799 - 3368617
Alignment:
Q  265 aatcacatacatgatgatgttgcctaatttgtcgttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctct 364  Q
    ||||||||| ||||||| |||||||   | ||| || |||| ||||||||||||||||||||| |||||||| | ||||| |  ||||||||| ||||||    
T  3368799 aatcacatatatgatgacgttgcct---tcgtcattctgtctaaattacctctcaaatctttgtttcgatttcgttgtgtgcgtaaatcatggtctctct 3368703  T
Q  365 tgtttgaaaacccttatttcatgagcatgtataggaggaatttcttatacaaggatcattcttgttataatgatacatctttcctc 450  Q
    | |||||||||||||||||||||  |||||   | || | ||| ||||  ||| ||||||||| ||| |||||||||||| |||||    
T  3368702 tatttgaaaacccttatttcatggacatgttccgaagaatttttttatctaagaatcattcttattacaatgatacatctctcctc 3368617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 304 - 450
Target Start/End: Original strand, 34287584 - 34287730
Alignment:
Q  304 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtataggagga 403  Q
    ||||||||||||||||||||| |  |||||||||| ||  |||  ||||||||| |||  ||||||||||||||||||||||||| ||| | | | || |    
T  34287584 tcaaaattacctctcaaatctatctttcgattttgttgcatacgcaaatcatggtctccattgtttgaaaacccttatttcatgaacatctttcgaagaa 34287683  T
Q  404 atttcttatacaaggatcattcttgttataatgatacatctttcctc 450  Q
    ||||||||| ||| |||||||| | ||| || ||||||||| |||||    
T  34287684 atttcttatccaatgatcattcatattacaacgatacatctctcctc 34287730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 394
Target Start/End: Complemental strand, 19226307 - 19226212
Alignment:
Q  299 ttttgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 394  Q
    ||||||||||| ||||| | |||||| | | |||||||   ||||||   ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19226307 ttttgtcaaaactacctttgaaatctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19226212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 361020 - 361114
Alignment:
Q  302 tgtcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 396  Q
    ||||||| || ||||| |||||||||  ||||||    |||||||| |||||||||  | | || |||||||||||||||||||||| |||||||    
T  361020 tgtcaaagttgcctctaaaatctttgcatcgattcaaatgtgtacacaaatcatgggttatgttatttgaaaacccttatttcatgaacatgtat 361114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 19220747 - 19220792
Alignment:
Q  349 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 394  Q
    ||||| |||||||| |||||||||||| |||||||||||| |||||    
T  19220747 aaatcgtggactcttttgtttgaaaactcttatttcatgaacatgt 19220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 40399786 - 40399722
Alignment:
Q  331 cgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgta 395  Q
    |||||||  ||||| || |||||||||||||| || || ||||||||| ||||||||| ||||||    
T  40399786 cgattttcttgtgttcacaaatcatggactcttttattcgaaaaccctaatttcatgaacatgta 40399722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 396
Target Start/End: Original strand, 9590 - 9679
Alignment:
Q  307 aaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 396  Q
    ||||| ||||| ||||||||||  |||||| | |||||||| ||||||||| ||| ||| |||||||||||| ||||||||| |||||||    
T  9590 aaattgcctcttaaatctttgaaacgatttagttgtgtacataaatcatggtctcgcttatttgaaaaccctaatttcatgaacatgtat 9679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 396
Target Start/End: Complemental strand, 287550 - 287458
Alignment:
Q  304 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 396  Q
    |||||||| ||||| |||||||| |  |||||| | ||||||   |||||||||||||||||||||||||| | | | ||||||| |||||||    
T  287550 tcaaaattgcctctaaaatctttaaaacgatttggatgtgtatgtaaatcatggactctcttgtttgaaaatcttcacttcatgaccatgtat 287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 393
Target Start/End: Complemental strand, 21379389 - 21379306
Alignment:
Q  310 ttacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatg 393  Q
    |||||||| ||||||||||  |||||| | || || |  ||||||||| ||||||| ||||||||| |||||||||||| ||||    
T  21379389 ttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaacatg 21379306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 25627371 - 25627416
Alignment:
Q  349 aaatcatggactctcttgtttgaaaacccttatttcatgagcatgt 394  Q
    ||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  25627371 aaatcatggtctctcttatttgaaaacccttctttcatgaccatgt 25627416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 396
Target Start/End: Original strand, 16920093 - 16920185
Alignment:
Q  304 tcaaaattacctctcaaatctttgattcgattttgctgtgtacaaaaatcatggactctcttgtttgaaaacccttatttcatgagcatgtat 396  Q
    |||| ||||||||| ||||||||||  |||||| | || ||||  ||||||||| |  | ||||||||||||| | ||||||||| |||||||    
T  16920093 tcaacattacctctaaaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtat 16920185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University