View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6519_high_6 (Length: 243)
Name: NF6519_high_6
Description: NF6519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6519_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 19978611 - 19978853
Alignment:
| Q |
1 |
ataccgagcatatagacgactaataggaagaccatatccatatccagccattgtcacattatcgccaactccaagatcggcatgctcatccaatggattt |
100 |
Q |
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| T |
19978611 |
ataccgagcatatagacgactaataggaagaccatatccatatccagccattgtcacattatcgccaactccaagatcggcatgctcatccaatggattt |
19978710 |
T |
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| Q |
101 |
ctagcagtactatacagatatgtaaaaatctttcgcagaccacttcttggtattccacctccctcatccgaaatctacaatgccaattagaccaactgct |
200 |
Q |
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| T |
19978711 |
ctagcagtactatacagatatgtaaaaatctttcgcagaccacttcttggtattccacctccctcatccgaaatctacaatgccgattagaccaactact |
19978810 |
T |
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| Q |
201 |
ttaacaaagaatcatgataatagcaagtgaaaagaactgatgc |
243 |
Q |
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| T |
19978811 |
ttaacaaagaatcatgataatagcaagtgaaaagaaccgatgc |
19978853 |
T |
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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 208
Target Start/End: Original strand, 8042277 - 8042486
Alignment:
| Q |
2 |
taccgagcatatagacgactaataggaagaccatatccatatccagccattgt---cacattatcgccaactccaagatcggcatgctcatccaatggat |
98 |
Q |
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| T |
8042277 |
taccgagcatataaacgactaataggaagaccatatccatatccagccattgttgtcacactatcagctactccaagatctgcatgctcatccaatgggt |
8042376 |
T |
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| Q |
99 |
ttctagcagtactatacagatatgtaaaaatctttcgcagaccacttcttggtattccacctccctcatccgaaatctacaatgccaattagaccaactg |
198 |
Q |
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| T |
8042377 |
ttctggcagtactgtacagatatgtaaagattttcggcagaccacttcttggaattccacctccctcgtcagatatctaccatttcatttagaataaatg |
8042476 |
T |
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| Q |
199 |
ctttaacaaa |
208 |
Q |
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| T |
8042477 |
ctttaacaaa |
8042486 |
T |
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