View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6519_low_1 (Length: 384)
Name: NF6519_low_1
Description: NF6519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6519_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 19978836 - 19979193
Alignment:
| Q |
6 |
agtgagaagaactgatgcatcataaaggttaacaaaggttacctttatggtaacatcctctaatccatcagcaactattattcttatgggaggtggatct |
105 |
Q |
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| T |
19978836 |
agtgaaaagaaccgatgcatcataaattttaacaaaggttacctttatggtaacatcctctaatccatcagcaactattattcttatgggaggtggatct |
19978935 |
T |
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| Q |
106 |
ttgtcggaattcatataacgctcttcgacagcacgcaaagagttcttaaccaactcaaataccataagatgcaagtgagctggaacatacctattgtaaa |
205 |
Q |
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| T |
19978936 |
ttgtcggaattcatataacgctcttcaacggcacgcaaagagttcttaaccaactcaaataccataagatgcaagtgtgctggaacatacctattgtaaa |
19979035 |
T |
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| Q |
206 |
aacatatctatttcaaataacagaacagaaaataacttgttgagtacaggttaaaattgttatgagataataaccactcctagcataaaacataaacaaa |
305 |
Q |
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| T |
19979036 |
aac--atctattttaaataacagaacagaaaataacttcttgagtacagtttaaaactgttatgagataacagccactcctagcataaaacataaacaaa |
19979133 |
T |
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| Q |
306 |
tgaattcatagaagtaaaaagtatgcaactcacggaaaagcaaaatcaggatcaccgtag |
365 |
Q |
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| T |
19979134 |
cgaattcatagaagtaaaaagtatgcaactcacggaaaagtaaaatcaggatcaccgtag |
19979193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 8042566 - 8042734
Alignment:
| Q |
43 |
gttacctttatggtaacatcctctaatccatcagcaactattattcttatgggaggtggatctttgtcggaattcatataacgctcttcgacagcacgca |
142 |
Q |
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| T |
8042566 |
gttacctttatggtaacatcctctaatccatcagcaactattattcttatgggaggtgaaactttgtcagaatccatataacgctcttggacagcacgta |
8042665 |
T |
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| Q |
143 |
aagagttcttaaccaactcaaataccataagatgcaagtgagctggaacatacctattgtaaaaacata |
211 |
Q |
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| T |
8042666 |
gcgagttcttaaccaactcgaataccataagatgcaagtgagctggaacatacctgttgtgaaaacata |
8042734 |
T |
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