View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6519_low_2 (Length: 343)

Name: NF6519_low_2
Description: NF6519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6519_low_2
NF6519_low_2
[»] chr1 (4 HSPs)
chr1 (208-343)||(20425204-20425339)
chr1 (20-109)||(20425437-20425526)
chr1 (55-93)||(43804961-43804999)
chr1 (63-96)||(31288362-31288395)
[»] chr3 (8 HSPs)
chr3 (215-317)||(19543493-19543596)
chr3 (62-104)||(15974514-15974556)
chr3 (55-93)||(15373182-15373220)
chr3 (55-93)||(15391648-15391686)
chr3 (55-93)||(15395986-15396024)
chr3 (55-93)||(15410192-15410230)
chr3 (55-93)||(15416552-15416590)
chr3 (62-96)||(42296475-42296509)
[»] chr6 (2 HSPs)
chr6 (63-104)||(13187001-13187042)
chr6 (46-94)||(2991656-2991704)
[»] chr8 (1 HSPs)
chr8 (53-96)||(18188732-18188775)
[»] chr5 (4 HSPs)
chr5 (53-103)||(8418587-8418637)
chr5 (53-96)||(42340001-42340044)
chr5 (63-96)||(12401909-12401942)
chr5 (63-95)||(27941314-27941346)
[»] chr7 (4 HSPs)
chr7 (63-96)||(26474317-26474350)
chr7 (63-96)||(26550757-26550790)
chr7 (53-94)||(7626896-7626937)
chr7 (53-94)||(36708702-36708743)
[»] scaffold0071 (1 HSPs)
scaffold0071 (55-93)||(45648-45686)
[»] chr4 (1 HSPs)
chr4 (73-107)||(35225039-35225073)
[»] scaffold0604 (1 HSPs)
scaffold0604 (47-96)||(4695-4744)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 208 - 343
Target Start/End: Complemental strand, 20425339 - 20425204
Alignment:
Q  208 cagacaactacggtaacttaccctagagcgggtattgtgaatctgaaaacccttttgaaccttctttttcttagccttagacatcacctcgatgaaaggc 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20425339 cagacaactacagtaacttaccctagagcgggtattgtgaatctgaaaacccttttgaaccttctttttcttagccttagacatcacctcgatgaaaggc 20425240  T
Q  308 tcttcagtagtagtagaaccaataacacggttcttc 343  Q
    |||||||||||||||||||||||| |||||||||||    
T  20425239 tcttcagtagtagtagaaccaataccacggttcttc 20425204  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 20425526 - 20425437
Alignment:
Q  20 ctagatatatataaaaataagataacggaaattagaacaaacagagaagggggacataaaccaaaaccttctcaaacgataaaagcaacg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20425526 ctagatatatataaaaataagataacggaaattagaacaaacagagaagggggacataaaccaaaaccttctcaaacgataaaagcaacg 20425437  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 43804961 - 43804999
Alignment:
Q  55 aacaaacagagaagggggacataaaccaaaaccttctca 93  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  43804961 aacaaaaagagaagggggacatagaccaaaaccttctca 43804999  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 31288362 - 31288395
Alignment:
Q  63 gagaagggggacataaaccaaaaccttctcaaac 96  Q
    ||||||||||||||| ||||||||||||||||||    
T  31288362 gagaagggggacatagaccaaaaccttctcaaac 31288395  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 215 - 317
Target Start/End: Original strand, 19543493 - 19543596
Alignment:
Q  215 ctacggtaacttaccc-tagagcgggtattgtgaatctgaaaacccttttgaaccttctttttcttagccttagacatcacctcgatgaaaggctcttca 313  Q
    |||| ||| ||||||| |||| || ||||| ||||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  19543493 ctactgtatcttacccgtagatcgagtattatgaacttgaaaacccttttgaaccttctttttcttggccttagacaccacctcgatgaaaggctcttca 19543592  T
Q  314 gtag 317  Q
    ||||    
T  19543593 gtag 19543596  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 15974556 - 15974514
Alignment:
Q  62 agagaagggggacataaaccaaaaccttctcaaacgataaaag 104  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  15974556 agagaagggggacataaaccaaaaccttctcaaacaataaaag 15974514  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 15373220 - 15373182
Alignment:
Q  55 aacaaacagagaagggggacataaaccaaaaccttctca 93  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  15373220 aacaaaaagagaagggggacatagaccaaaaccttctca 15373182  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 15391686 - 15391648
Alignment:
Q  55 aacaaacagagaagggggacataaaccaaaaccttctca 93  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  15391686 aacaaaaagagaagggggacatagaccaaaaccttctca 15391648  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 15396024 - 15395986
Alignment:
Q  55 aacaaacagagaagggggacataaaccaaaaccttctca 93  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  15396024 aacaaaaagagaagggggacatagaccaaaaccttctca 15395986  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 15410230 - 15410192
Alignment:
Q  55 aacaaacagagaagggggacataaaccaaaaccttctca 93  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  15410230 aacaaaaagagaagggggacatagaccaaaaccttctca 15410192  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 15416590 - 15416552
Alignment:
Q  55 aacaaacagagaagggggacataaaccaaaaccttctca 93  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  15416590 aacaaaaagagaagggggacatagaccaaaaccttctca 15416552  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 42296509 - 42296475
Alignment:
Q  62 agagaagggggacataaaccaaaaccttctcaaac 96  Q
    |||||||||| ||||||||||||||||||||||||    
T  42296509 agagaaggggaacataaaccaaaaccttctcaaac 42296475  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 13187001 - 13187042
Alignment:
Q  63 gagaagggggacataaaccaaaaccttctcaaacgataaaag 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  13187001 gagaaaggggacataaaccaaaaccttctcaaacgataaaag 13187042  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 2991704 - 2991656
Alignment:
Q  46 ggaaattagaacaaacagagaagggggacataaaccaaaaccttctcaa 94  Q
    |||||| |||||||| |||||||||| ||||| ||||||||||||||||    
T  2991704 ggaaataagaacaaaaagagaaggggaacatagaccaaaaccttctcaa 2991656  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 18188732 - 18188775
Alignment:
Q  53 agaacaaacagagaagggggacataaaccaaaaccttctcaaac 96  Q
    ||||||||  ||||||||||||||||||||||||||||||||||    
T  18188732 agaacaaaaggagaagggggacataaaccaaaaccttctcaaac 18188775  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 8418587 - 8418637
Alignment:
Q  53 agaacaaacagagaagggggacataaaccaaaaccttctcaaacgataaaa 103  Q
    |||||||| |||||| ||  |||||||||||||||||||||||||||||||    
T  8418587 agaacaaaaagagaaaggaaacataaaccaaaaccttctcaaacgataaaa 8418637  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 42340044 - 42340001
Alignment:
Q  53 agaacaaacagagaagggggacataaaccaaaaccttctcaaac 96  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||    
T  42340044 agaacaaaaggagaagggggacataaaccgaaaccttctcaaac 42340001  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 12401909 - 12401942
Alignment:
Q  63 gagaagggggacataaaccaaaaccttctcaaac 96  Q
    ||||||||||||||| ||||||||||||||||||    
T  12401909 gagaagggggacatagaccaaaaccttctcaaac 12401942  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 27941314 - 27941346
Alignment:
Q  63 gagaagggggacataaaccaaaaccttctcaaa 95  Q
    ||||||||||||||||||||||||||| |||||    
T  27941314 gagaagggggacataaaccaaaaccttatcaaa 27941346  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 26474350 - 26474317
Alignment:
Q  63 gagaagggggacataaaccaaaaccttctcaaac 96  Q
    ||||||||||||||||||||||||||||||||||    
T  26474350 gagaagggggacataaaccaaaaccttctcaaac 26474317  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 26550790 - 26550757
Alignment:
Q  63 gagaagggggacataaaccaaaaccttctcaaac 96  Q
    ||||||||||||||||||||||||||||||||||    
T  26550790 gagaagggggacataaaccaaaaccttctcaaac 26550757  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 7626896 - 7626937
Alignment:
Q  53 agaacaaacagagaagggggacataaaccaaaaccttctcaa 94  Q
    |||||||| |||||||||||||||| |||||| |||||||||    
T  7626896 agaacaaaaagagaagggggacatagaccaaatccttctcaa 7626937  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 36708743 - 36708702
Alignment:
Q  53 agaacaaacagagaagggggacataaaccaaaaccttctcaa 94  Q
    |||||||| |||||||||||||||| ||||||| ||||||||    
T  36708743 agaacaaaaagagaagggggacatagaccaaaatcttctcaa 36708702  T

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Target: scaffold0071 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 45648 - 45686
Alignment:
Q  55 aacaaacagagaagggggacataaaccaaaaccttctca 93  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  45648 aacaaaaagagaagggggacatagaccaaaaccttctca 45686  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 35225073 - 35225039
Alignment:
Q  73 acataaaccaaaaccttctcaaacgataaaagcaa 107  Q
    ||||||||||||||||||| |||||||||||||||    
T  35225073 acataaaccaaaaccttcttaaacgataaaagcaa 35225039  T

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Target: scaffold0604 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 4744 - 4695
Alignment:
Q  47 gaaattagaacaaacagagaagggggacataaaccaaaaccttctcaaac 96  Q
    ||||| ||||||||  |||||| | |||||||||||||||||||||||||    
T  4744 gaaataagaacaaaaggagaagtgagacataaaccaaaaccttctcaaac 4695  T

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