View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6519_low_3 (Length: 317)

Name: NF6519_low_3
Description: NF6519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6519_low_3
NF6519_low_3
[»] chr7 (3 HSPs)
chr7 (110-311)||(46831479-46831680)
chr7 (126-258)||(48953647-48953780)
chr7 (116-251)||(42604117-42604252)
[»] chr3 (4 HSPs)
chr3 (110-311)||(53606194-53606395)
chr3 (135-264)||(37145761-37145890)
chr3 (116-258)||(17716255-17716397)
chr3 (116-258)||(19017484-19017626)
[»] chr6 (2 HSPs)
chr6 (106-310)||(1297374-1297578)
chr6 (116-250)||(8639291-8639425)
[»] chr4 (5 HSPs)
chr4 (112-240)||(40696029-40696154)
chr4 (135-264)||(33806080-33806209)
chr4 (133-258)||(30961084-30961210)
chr4 (162-303)||(44567174-44567315)
chr4 (199-274)||(11240274-11240349)
[»] chr1 (2 HSPs)
chr1 (135-264)||(721644-721773)
chr1 (135-274)||(38880857-38880996)
[»] chr5 (3 HSPs)
chr5 (135-264)||(23946880-23947009)
chr5 (135-264)||(42689709-42689838)
chr5 (116-258)||(16781635-16781777)
[»] chr8 (1 HSPs)
chr8 (135-264)||(45210741-45210870)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 110 - 311
Target Start/End: Complemental strand, 46831680 - 46831479
Alignment:
Q  110 ttcctgacaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcac 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46831680 ttcctgacaaaataaatgcctagcgcatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatctgaattagcac 46831581  T
Q  210 caaatttagcaaagaagtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttcatgtcatttagcaggtctttgatattctggataag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46831580 caaatttagcaaagaagtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttcctgtcatttagcaggtctttgatattctggataag 46831481  T
Q  310 ag 311  Q
    ||    
T  46831480 ag 46831479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 48953780 - 48953647
Alignment:
Q  126 tgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagc-aaaga 224  Q
    |||||||  ||||||||||||||| ||| |||||||||| || |||||||||||||||||||||| |||||| |||| ||||  | |||||||| ||| |    
T  48953780 tgcctagagcatcagctctaagcaggggaaggagatcagttgtaggcgattgatggacgacaagatcagcatctgaaatagcttcgaatttagcaaaaaa 48953681  T
Q  225 agtccgcacattgattcccctctcttaaagtgtg 258  Q
    |||  |||| ||||||||||||||||| ||||||    
T  48953680 agtttgcacgttgattcccctctcttagagtgtg 48953647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 251
Target Start/End: Original strand, 42604117 - 42604252
Alignment:
Q  116 acaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatt 215  Q
    ||||||||| |||||| | |||||||||||||||  || ||||| |||||||| |||||||| ||||| ||||    ||||| |||| ||||||| ||||    
T  42604117 acaaaataagtgcctatcgcatcagctctaagcataggaaggaggtcagctgggggcgattggtggacaacaaactgagcatctgaaatagcacccaatt 42604216  T
Q  216 tagcaaagaagtccgcacattgattcccctctctta 251  Q
    |||||||| | |||||||||||||| ||||||||||    
T  42604217 tagcaaagtaatccgcacattgatttccctctctta 42604252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 110 - 311
Target Start/End: Original strand, 53606194 - 53606395
Alignment:
Q  110 ttcctgacaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcac 209  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53606194 ttcctgacaaaataaatgcctagcgcatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatctgaattagcac 53606293  T
Q  210 caaatttagcaaagaagtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttcatgtcatttagcaggtctttgatattctggataag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53606294 caaatttagcaaagaagtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttcctgtcatttagcaggtctttgatattctggataag 53606393  T
Q  310 ag 311  Q
    ||    
T  53606394 ag 53606395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 37145890 - 37145761
Alignment:
Q  135 catcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcaca 234  Q
    ||||| |||||||||  |||||||| |||||||| ||| |||| ||||||||||||  | | | |||||||||||| || || |||||||| ||||||||    
T  37145890 catcatctctaagcagagggaggaggtcagctggcggcaattggtggacgacaagatgaacttctgaattagcacccaacttggcaaagaaatccgcaca 37145791  T
Q  235 ttgattcccctctcttaaagtgtggtggag 264  Q
    ||| |||||||||||||| ||||| |||||    
T  37145790 ttggttcccctctcttaatgtgtgatggag 37145761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 17716255 - 17716397
Alignment:
Q  116 acaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatt 215  Q
    ||||||||| |||||| | |||||||||||||||  || ||||| |||||||| |||||||| ||||| ||||    ||||| |||| | ||||| ||||    
T  17716255 acaaaataagtgcctatcgcatcagctctaagcataggaaggaggtcagctgggggcgattggtggacaacaaactgagcatctgaaatggcacccaatt 17716354  T
Q  216 tagcaaagaagtccgcacattgattcccctctcttaaagtgtg 258  Q
    |||||||  | || ||||||||||| ||||||||||| |||||    
T  17716355 tagcaaaataatctgcacattgatttccctctcttaaggtgtg 17716397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 19017484 - 19017626
Alignment:
Q  116 acaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatt 215  Q
    ||||||||| |||||| | |||||||||||||||  || ||||| |||||||| |||||||| ||||| ||||    ||||| |||| | ||||| ||||    
T  19017484 acaaaataagtgcctatcgcatcagctctaagcataggaaggaggtcagctgggggcgattggtggacaacaaactgagcatctgaaatggcacccaatt 19017583  T
Q  216 tagcaaagaagtccgcacattgattcccctctcttaaagtgtg 258  Q
    |||||||  | || ||||||||||| ||||||||||| |||||    
T  19017584 tagcaaaataatctgcacattgatttccctctcttaaggtgtg 19017626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 106 - 310
Target Start/End: Original strand, 1297374 - 1297578
Alignment:
Q  106 ctagttcctgacaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaatta 205  Q
    |||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || ||| |||||||    
T  1297374 ctagctcctaacaaaataaatgcctagcgcatcagctctaagcatggggaggagatcagctggaggcgaatgatggacgacaagatcaacatctgaatta 1297473  T
Q  206 gcaccaaatttagcaaagaagtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttcatgtcatttagcaggtctttgatattctgga 305  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||| |||||||| ||    
T  1297474 gcaccaaatttagcagagaagtccgcacattgattcccttctcttaaagtgtggtggagggaaatgttccgatcatttagcaggtcttcgatattctcga 1297573  T
Q  306 taaga 310  Q
    |||||    
T  1297574 taaga 1297578  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 8639425 - 8639291
Alignment:
Q  116 acaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatt 215  Q
    ||||| ||| |||||| | |||||||||||||||  || ||||| ||||||||||||||||| ||||||| || |  ||||| |||| ||||||| ||||    
T  8639425 acaaagtaagtgcctatcgcatcagctctaagcagaggaaggaggtcagctggaggcgattggtggacgataaaatgagcatctgaactagcacccaatt 8639326  T
Q  216 tagcaaagaagtccgcacattgattcccctctctt 250  Q
    |||||||| | || |||||||||||||||||||||    
T  8639325 tagcaaagtaatctgcacattgattcccctctctt 8639291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 112 - 240
Target Start/End: Original strand, 40696029 - 40696154
Alignment:
Q  112 cctgacaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcacca 211  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |   ||||| ||||||||||||||||| |||||| |||||||||| ||    
T  40696029 cctgacaaaataaatgcctagcacatcacctctaagcaaggggaggagatcgg---gaggcaattgatggacgacaagatcagcatctgaattagcatca 40696125  T
Q  212 aatttagcaaagaagtccgcacattgatt 240  Q
    |||||| ||||||||||||||||||||||    
T  40696126 aatttaacaaagaagtccgcacattgatt 40696154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 33806209 - 33806080
Alignment:
Q  135 catcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcaca 234  Q
    |||| ||||||||||  |||||||| |||||||| || ||||| ||||||||||||  | ||| |||||||||||| || || |||||||| ||||||||    
T  33806209 catccgctctaagcagagggaggaggtcagctggcggtgattggtggacgacaagatgaacatctgaattagcacccaacttggcaaagaaatccgcaca 33806110  T
Q  235 ttgattcccctctcttaaagtgtggtggag 264  Q
    ||| |||||||||||||| ||||| |||||    
T  33806109 ttggttcccctctcttaatgtgtgatggag 33806080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 30961084 - 30961210
Alignment:
Q  133 cacatcagctctaagcaaggggaggagatcagctggaggcgattga-tggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgc 231  Q
    |||||||||||||||||  || ||||| |||||||||||||| ||  || || |||| |  ||||| |||||||||||| |||||||||||||| ||| |    
T  30961084 cacatcagctctaagcagaggaaggaggtcagctggaggcgaatgggtgcactacaaaatgagcatctgaattagcacccaatttagcaaagaaatccac 30961183  T
Q  232 acattgattcccctctcttaaagtgtg 258  Q
    |||||| |||||||||||||| |||||    
T  30961184 acattggttcccctctcttaaggtgtg 30961210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 303
Target Start/End: Complemental strand, 44567315 - 44567174
Alignment:
Q  162 cagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcacattgattcccctctcttaaagtgtggtg 261  Q
    |||| |||| |||||| ||||||| ||||  |||||||||||||||||| ||||||| |||| | ||  |||||| ||||||||||||||| ||||| ||    
T  44567315 cagccggagacgattggtggacgataagatgagcatatgaattagcacctaatttagtaaagtaatctccacattcattcccctctcttaaggtgtgatg 44567216  T
Q  262 gagggaaatgttcatgtcatttagcaggtctttgatattctg 303  Q
     || || ||||||   |||  ||||| |||||| ||||||||    
T  44567215 aagagagatgttccgatcaactagcaagtctttaatattctg 44567174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 11240349 - 11240274
Alignment:
Q  199 tgaattagcaccaaatttagcaaagaagtccgcacattgattcccctctcttaaagtgtggtggagggaaatgttc 274  Q
    |||| ||||||| |||||||||||| | |||  |||||| |||||||||||||| ||||| ||||| || ||||||    
T  11240349 tgaactagcacctaatttagcaaagtaatccaaacattggttcccctctcttaaggtgtgatggagagagatgttc 11240274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 721773 - 721644
Alignment:
Q  135 catcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcaca 234  Q
    |||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||  ||||| |||||||||||| || ||||||||||| ||||| ||    
T  721773 catcagctctaagcagagggaggaggtcagctggaggcgattggtggacgacaagatgagcatctgaattagcacccaacttagcaaagaaatccgcgca 721674  T
Q  235 ttgattcccctctcttaaagtgtggtggag 264  Q
    |||  ||||||||||||| ||||| |||||    
T  721673 ttggctcccctctcttaatgtgtgatggag 721644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 274
Target Start/End: Complemental strand, 38880996 - 38880857
Alignment:
Q  135 catcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcaca 234  Q
    |||||| ||||||||  |||||||| ||||||||||||||||| ||||||||||||  ||||| ||||||| |||| || ||||||||||| ||||| ||    
T  38880996 catcagttctaagcagagggaggaggtcagctggaggcgattggtggacgacaagatgagcatctgaattaacacccaacttagcaaagaaatccgcgca 38880897  T
Q  235 ttgattcccctctcttaaagtgtggtggagggaaatgttc 274  Q
    ||| |||| || |||||| ||||| ||||| || ||||||    
T  38880896 ttggttcctctatcttaatgtgtgatggagagagatgttc 38880857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 23947009 - 23946880
Alignment:
Q  135 catcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcaca 234  Q
    |||||||||||||||  |||||||| |||||||| || ||||| ||||||||||||  | ||| |||||||||||| || || |||||||| ||||||||    
T  23947009 catcagctctaagcagagggaggaggtcagctggtggtgattggtggacgacaagatgaacatctgaattagcacccaacttggcaaagaaatccgcaca 23946910  T
Q  235 ttgattcccctctcttaaagtgtggtggag 264  Q
    ||| |||||||||||||||||||| |||||    
T  23946909 ttggttcccctctcttaaagtgtgatggag 23946880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 42689709 - 42689838
Alignment:
Q  135 catcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcaca 234  Q
    |||||||||||||||  |||||||| |||||||| |||||||| ||||||||||||  | ||| |||||||||||| || || |||||||| ||||||||    
T  42689709 catcagctctaagcagagggaggaggtcagctggcggcgattggtggacgacaagatgaacatctgaattagcacccaacttggcaaagaaatccgcaca 42689808  T
Q  235 ttgattcccctctcttaaagtgtggtggag 264  Q
    ||| |||||||||||||| ||||| |||||    
T  42689809 ttggttcccctctcttaatgtgtgatggag 42689838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 16781777 - 16781635
Alignment:
Q  116 acaaaataaatgcctagcacatcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatt 215  Q
    ||||| ||| |||||| | |||||  ||||||||  || ||||| ||||||||||||||||| |||| ||||| |  ||| | | |||||||| | ||||    
T  16781777 acaaagtaagtgcctatcgcatcaattctaagcagaggaaggaggtcagctggaggcgattggtggaggacaaaatgagcgtctaaattagcatccaatt 16781678  T
Q  216 tagcaaagaagtccgcacattgattcccctctcttaaagtgtg 258  Q
    |||||||| | ||| |||||||||||||||||||||| |||||    
T  16781677 tagcaaagtaatccacacattgattcccctctcttaaggtgtg 16781635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 45210741 - 45210870
Alignment:
Q  135 catcagctctaagcaaggggaggagatcagctggaggcgattgatggacgacaagagcagcatatgaattagcaccaaatttagcaaagaagtccgcaca 234  Q
    |||||||||||||||  |||||||| |||||||| || ||||| ||||||||||||  | ||| |||||||||||| || || |||||||| ||||||||    
T  45210741 catcagctctaagcagagggaggaggtcagctggcggtgattggtggacgacaagatgaacatctgaattagcacccaacttggcaaagaaatccgcaca 45210840  T
Q  235 ttgattcccctctcttaaagtgtggtggag 264  Q
    ||| |||||||||||||| ||||| |||||    
T  45210841 ttggttcccctctcttaatgtgtgatggag 45210870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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