View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6519_low_5 (Length: 272)

Name: NF6519_low_5
Description: NF6519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6519_low_5
NF6519_low_5
[»] chr1 (4 HSPs)
chr1 (1-262)||(20424888-20425148)
chr1 (37-193)||(43805293-43805448)
chr1 (18-79)||(24010411-24010472)
chr1 (45-221)||(31288721-31288896)
[»] chr5 (3 HSPs)
chr5 (37-213)||(20424806-20424981)
chr5 (34-137)||(12402253-12402356)
chr5 (158-212)||(5430544-5430598)
[»] chr8 (7 HSPs)
chr8 (66-223)||(8410856-8411012)
chr8 (42-193)||(12737207-12737357)
chr8 (45-224)||(10865937-10866114)
chr8 (37-194)||(18189084-18189237)
chr8 (43-212)||(275983-276152)
chr8 (43-212)||(639697-639866)
chr8 (43-212)||(825503-825672)
[»] scaffold0604 (1 HSPs)
scaffold0604 (37-213)||(4231-4406)
[»] chr3 (1 HSPs)
chr3 (3-100)||(19543675-19543769)
[»] chr7 (3 HSPs)
chr7 (37-103)||(26473960-26474026)
chr7 (37-103)||(26550400-26550466)
chr7 (18-79)||(7486078-7486139)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 20425148 - 20424888
Alignment:
Q  1 tgcctctagcatcgttcccattccaaacatgctgctgcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattgga 100  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20425148 tgcctctagcatcgctcccattccaaacatgcttctgcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatcgacattgga 20425049  T
Q  101 agattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgat 200  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |    
T  20425048 agattctaaaccacaccaatatagtggatcttgaat-atagtccaagtctgttacgacatcactccaaggaccaacgatgcgcatatcaggaaatttgct 20424950  T
Q  201 actatgttggtcttctctttgtttctcaatcagctcagtggtctgaacatcttcaatctgtg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20424949 actatgttggtcttctctttgtttctcaatcagctcagtggtctgaacatcttcaatctgtg 20424888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 43805293 - 43805448
Alignment:
Q  37 gcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaat 136  Q
    |||| |||||||||||||||||||  || || |||||||| ||||  | ||||  ||||||||||||    |||||| ||||| | || |||| ||||||    
T  43805293 gcaaaatctccaagtcatgagcgatgttggggtttaaaacatcttgggtaacaatgacattggaagaactcaaaccataccaagacgggggatattgaat 43805392  T
Q  137 aatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaa 193  Q
    | || ||||||||||| ||  | ||||||||||||||||||||| ||||||||||||    
T  43805393 a-taatccaagtctgtcacagcgtcactccaaggaccaacaatgcgcatatcaggaa 43805448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 24010411 - 24010472
Alignment:
Q  18 ccattccaaacatgctgctgcaagatctccaagtcatgagcgacattaggatttaaaacctc 79  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||| || | |||||||||    
T  24010411 ccattccaaaaatgttgttgcaagatctccaagtcatgagcgacatttgggtgtaaaacctc 24010472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 31288721 - 31288896
Alignment:
Q  45 tccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtcc 144  Q
    |||||| |||||||||  |||||||||||||| ||||||| |||   ||||||||||||    |||||| ||||| | || ||||||||||| ||| | |    
T  31288721 tccaagccatgagcgatgttaggatttaaaacatctttagtaaccatgacattggaagaactcaaaccataccaagacgggggatcttgaat-ataattc 31288819  T
Q  145 aagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtcttctctttg 221  Q
    |||||||| ||    || |||||||||||||  ||| |||||||||||| |||| | || |||| |||||| |||||    
T  31288820 aagtctgtcacagtgtcgctccaaggaccaattatgcgcatatcaggaagtttgttgctctgtttgtcttcactttg 31288896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 37 - 213
Target Start/End: Complemental strand, 20424981 - 20424806
Alignment:
Q  37 gcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaat 136  Q
    |||| |||||||| |||||||| |  ||||||||||||||||||||||||||   ||||||||||||  |||||||| ||||| |||| |||||||| ||    
T  20424981 gcaaaatctccaaatcatgagcaatgttaggatttaaaacctctttagaaaccatgacattggaagaacctaaaccataccaagatgggggatcttg-at 20424883  T
Q  137 aatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtct 213  Q
     |||||| |||||||| ||  | |||||||||| |||||| ||| ||||||||||||||||| | || |||||||||    
T  20424882 tatagtctaagtctgtcacagcgtcactccaagaaccaactatgcgcatatcaggaaatttgttgctttgttggtct 20424806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 12402253 - 12402356
Alignment:
Q  34 gctgcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttg 133  Q
    ||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||   ||||||||||||    |||||| ||||| | || ||||||||    
T  12402253 gctgcaaaatctccaagtcatgggcgatattaggatttaaaacatctttagaaaccatgacattggaagaactcaaaccataccaagacgggggatcttg 12402352  T
Q  134 aata 137  Q
    ||||    
T  12402353 aata 12402356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 5430598 - 5430544
Alignment:
Q  158 catcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtc 212  Q
    |||||||||||||||||||||| |||||||| ||||||||| ||  |||||||||    
T  5430598 catcactccaaggaccaacaatatgcatatccggaaatttgttatgatgttggtc 5430544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 223
Target Start/End: Original strand, 8410856 - 8411012
Alignment:
Q  66 ggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtccaagtctgttacgacatcactc 165  Q
    ||||||||||||||||| ||||| | |||||| || ||  | |||||||||||| ||||||| ||||||||| |||||||| | |||||||||  ||||     
T  8410856 ggatttaaaacctctttggaaacctcgacattagaggaacccaaaccacaccaagatggtggttcttgaata-tagtccaaatatgttacgacgacactt 8410954  T
Q  166 caaggaccaacaatgtgcatatcaggaaatttgatactatgttggtcttctctttgtt 223  Q
    || ||||||||||||||||||||| |||||||  |||| ||||||  |||||||||||    
T  8410955 cagggaccaacaatgtgcatatcaagaaatttactactttgttggatttctctttgtt 8411012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 12737357 - 12737207
Alignment:
Q  42 atctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatag 141  Q
    ||||||||||||||| |  | ||| |||||||||| |||||||||||   ||||||||||||   ||||||| ||||| |||| ||||||||||| |||     
T  12737357 atctccaagtcatgaacaccgttaagatttaaaacatctttagaaaccatgacattggaagaacataaaccataccaagatgggggatcttgaat-ataa 12737259  T
Q  142 tccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaa 193  Q
    || ||||| || || || ||||||||||||||||| ||| ||||||||||||    
T  12737258 tctaagtccgtcacaacgtcactccaaggaccaacgatgcgcatatcaggaa 12737207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 10866114 - 10865937
Alignment:
Q  45 tccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaataatagtcc 144  Q
    ||||||||||| ||||  |||||||||||||| ||||||| |||   ||||||||||||    |||||| ||||| | || ||||| |||||| || |||    
T  10866114 tccaagtcatgggcgatgttaggatttaaaacatctttagtaaccatgacattggaagaactcaaaccataccaagacgggggatcctgaata-taatcc 10866016  T
Q  145 aagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtcttctctttgttt 224  Q
    |||||||| ||  | ||||||||||||||||||||| |||||| ||| |||| | | ||||||| |||||| ||||||||    
T  10866015 aagtctgtgactgcgtcactccaaggaccaacaatgcgcatatgagg-aattcgttgctatgtttgtcttcactttgttt 10865937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 18189084 - 18189237
Alignment:
Q  37 gcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaat 136  Q
    |||| ||||||| ||||||||| |  |||||||||| |||||||||||||||   |||||| |||||  |||||||| |||||   | ||| ||||| ||    
T  18189084 gcaaaatctccaggtcatgagcaatgttaggatttagaacctctttagaaaccatgacattagaagaacctaaaccataccaa---gttgggtcttg-at 18189179  T
Q  137 aatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaa 194  Q
     |||||| |||||||| ||  | ||||||||||||||||| ||  |||||||||||||    
T  18189180 tatagtctaagtctgtcacagcgtcactccaaggaccaacgatccgcatatcaggaaa 18189237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 275983 - 276152
Alignment:
Q  43 tctccaagtcatgagcgacattaggatttaaaacctctttagaaacata-gacattggaagattctaaaccacaccaatatggtggatcttgaataatag 141  Q
    |||||||||||||||| |  |||| ||||||||| |||||| ||||  | ||||||||||||   ||||||| ||||| |||| |||||||| || |||     
T  275983 tctccaagtcatgagcaatgttagaatttaaaacatctttaaaaacccatgacattggaagaacataaaccataccaagatgggggatcttg-attataa 276081  T
Q  142 tccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtc 212  Q
    || ||||| || || || ||||||||||||||||  ||| ||||||||| || |||| | || ||||||||    
T  276082 tctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcagaaagtttgttgctctgttggtc 276152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 639866 - 639697
Alignment:
Q  43 tctccaagtcatgagcgacattaggatttaaaacctctttagaaacata-gacattggaagattctaaaccacaccaatatggtggatcttgaataatag 141  Q
    |||||||||||||||| |  |||| ||||||||| |||||| ||||  | ||||||||||||   ||||||| ||||| |||| |||||||| || |||     
T  639866 tctccaagtcatgagcaatgttagaatttaaaacatctttaaaaacccatgacattggaagaacataaaccataccaagatgggggatcttg-attataa 639768  T
Q  142 tccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtc 212  Q
    || ||||| || || || ||||||||||||||||  ||| ||||||||| || |||| | || ||||||||    
T  639767 tctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcagaaagtttgttgctctgttggtc 639697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 825672 - 825503
Alignment:
Q  43 tctccaagtcatgagcgacattaggatttaaaacctctttagaaacata-gacattggaagattctaaaccacaccaatatggtggatcttgaataatag 141  Q
    |||||||||||||||| |  |||| ||||||||| |||||| ||||  | ||||||||||||   ||||||| ||||| |||| |||||||| || |||     
T  825672 tctccaagtcatgagcaatgttagaatttaaaacatctttaaaaacccatgacattggaagaacataaaccataccaagatgggggatcttg-attataa 825574  T
Q  142 tccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtc 212  Q
    || ||||| || || || ||||||||||||||||  ||| ||||||||| || |||| | || ||||||||    
T  825573 tctaagtccgtcacaacgtcactccaaggaccaaggatgcgcatatcagaaagtttgttgctctgttggtc 825503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 213
Target Start/End: Complemental strand, 4406 - 4231
Alignment:
Q  37 gcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaagattctaaaccacaccaatatggtggatcttgaat 136  Q
    |||| ||||||||||||||| | |  ||||||||||||||||||||||||||   ||||||||||||  |||||||| ||||| |||| | |||||| ||    
T  4406 gcaaaatctccaagtcatgatcaatgttaggatttaaaacctctttagaaaccatgacattggaagaacctaaaccataccaagatggggaatcttg-at 4308  T
Q  137 aatagtccaagtctgttacgacatcactccaaggaccaacaatgtgcatatcaggaaatttgatactatgttggtct 213  Q
     ||| || |||| | | || || |||||||||| |||||| ||| ||||||||||||||| | | || |||||||||    
T  4307 tataatctaagtttatcacaacgtcactccaagtaccaacgatgcgcatatcaggaaattcgttgctttgttggtct 4231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 19543675 - 19543769
Alignment:
Q  3 cctctagcatcgttcccattccaaacatgctgctgcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattgga 100  Q
    ||||||| || ||||||||||||||||     |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||    
T  19543675 cctctagtattgttcccattccaaaca---gactgcaagatctccaagtcatgagcgacattgggatttaaaacctctttggaaacctcgacattgga 19543769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 26474026 - 26473960
Alignment:
Q  37 gcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaaga 103  Q
    |||| |||||||| ||||||||||  |||||||||||||| || ||||||||   ||||||||||||    
T  26474026 gcaaaatctccaaatcatgagcgatgttaggatttaaaacgtccttagaaaccatgacattggaaga 26473960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 26550466 - 26550400
Alignment:
Q  37 gcaagatctccaagtcatgagcgacattaggatttaaaacctctttagaaacatagacattggaaga 103  Q
    |||| |||||||| ||||||||||  |||||||||||||| || ||||||||   ||||||||||||    
T  26550466 gcaaaatctccaaatcatgagcgatgttaggatttaaaacgtccttagaaaccatgacattggaaga 26550400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 7486078 - 7486139
Alignment:
Q  18 ccattccaaacatgctgctgcaagatctccaagtcatgagcgacattaggatttaaaacctc 79  Q
    |||||||||| ||| | | ||||||||||||| |||||||||| ||| || |||||||||||    
T  7486078 ccattccaaaaatgtttccgcaagatctccaaatcatgagcgagatttgggtttaaaacctc 7486139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University