View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6520_high_3 (Length: 279)

Name: NF6520_high_3
Description: NF6520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6520_high_3
NF6520_high_3
[»] chr7 (6 HSPs)
chr7 (11-260)||(10601643-10601892)
chr7 (34-125)||(16824335-16824426)
chr7 (35-124)||(16968759-16968848)
chr7 (57-126)||(17008111-17008180)
chr7 (28-115)||(16992522-16992609)
chr7 (195-252)||(16968604-16968661)
[»] chr4 (1 HSPs)
chr4 (28-111)||(35262691-35262774)


Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 10601643 - 10601892
Alignment:
Q  11 gatgaagaacactgttttgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10601643 gatgaagaacactgttttgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatg 10601742  T
Q  111 acgatagttcttctgataatgatggtaaagagaaagagaagaaaaagggtgggcgaaaatatgataatgtcgcagaggaattgttgagagaggcaattga 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10601743 acgatagttcttctgataatgatggtaaggagaaagagaagaaaaagggtgggcgaaaatacgataatgtcgcagaggaattgttgagagaggcaattga 10601842  T
Q  211 tagacacaatggaatttctgagatgaataatgaggaggtgaaggataaaa 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10601843 tagacacaatggaatttctgagatgaataatgaggaggtgaaggataaaa 10601892  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 16824426 - 16824335
Alignment:
Q  34 tgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgatagttcttctg 125  Q
    ||||||||||||||||||||||||||| |||||||||||||  || |||||| |||||||||||||||| | |||||| || ||||||||||    
T  16824426 tgatgaaagtgaagaaaatgagactagtgatgaggattttatggtggatgaggtgaatgagatttctgaaagtgatgatgaaagttcttctg 16824335  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 16968848 - 16968759
Alignment:
Q  35 gatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgatagttcttct 124  Q
    ||||||||||||||||||||||| || |||||||||||||| ||||||||| |||||||||||| || ||||||||| || | |||||||    
T  16968848 gatgaaagtgaagaaaatgagaccagtgatgaggattttagggttgatgagatgaatgagatttttggcaatgatgatgacaattcttct 16968759  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 17008180 - 17008111
Alignment:
Q  57 ctagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgatagttcttctga 126  Q
    |||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  17008180 ctagtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatgatgacagttcttctga 17008111  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 16992609 - 16992522
Alignment:
Q  28 tgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgat 115  Q
    |||||| ||| | ||||||| ||||||  |||| ||||| ||||||  ||||||||||| |||||||||||| |||||||||||||||    
T  16992609 tgattcggataagagtgaagcaaatgattctagtgatgaagattttgaagttgatgagccgaatgagatttcagacaatgatgacgat 16992522  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 252
Target Start/End: Complemental strand, 16968661 - 16968604
Alignment:
Q  195 tgagagaggcaattgatagacacaatggaatttctgagatgaataatgaggaggtgaa 252  Q
    ||||||||| ||| |||||||| | |||||||||||||| |||| |||| ||||||||    
T  16968661 tgagagaggtaatggatagacaaagtggaatttctgagaggaatgatgaagaggtgaa 16968604  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 35262691 - 35262774
Alignment:
Q  28 tgattctgatgaaagtgaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatga 111  Q
    |||||||||||| ||||||||||||||  |||| ||||| ||||||  ||||||||| |||||||| ||||| |||||| ||||    
T  35262691 tgattctgatgagagtgaagaaaatgactctagtgatgaagattttgcagttgatgaactgaatgaaatttcagacaatcatga 35262774  T

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