View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6520_low_1 (Length: 666)
Name: NF6520_low_1
Description: NF6520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6520_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 16 - 649
Target Start/End: Original strand, 46214948 - 46215581
Alignment:
| Q |
16 |
atgtgttaacaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaagagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46214948 |
atgtgttaacaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaagagg |
46215047 |
T |
|
| Q |
116 |
gccaagtttactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagttta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46215048 |
gccaagtttactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagttta |
46215147 |
T |
|
| Q |
216 |
ccaatagatcatagaagggttaagtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaacatc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46215148 |
ccaatagatcatagaagggttaagtttaacatactctccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaacatc |
46215247 |
T |
|
| Q |
316 |
ctgaatggagtccagctgctataaaatcagcaatcatgacaacagcttatgttcatgataatactattaaacctcttagagatgcttcttctgctgaatt |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46215248 |
ctgaatggagtccagctgctataaaatcagcaatcatgacaacagcttatgttcatgataatactattaaacctcttagagatgcttcttctgctgaatt |
46215347 |
T |
|
| Q |
416 |
ttcaactccttatgatcatggtgctggccatattaatcctagaaaagctcttgatccaggtttattatatgatatcgaacctcaagattactttgagttt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46215348 |
ttcaactccttatgatcatggtgctggccatattaatcctagaaaagctcttgatccaggtttattatatgatatcgaacctcaagattactttgagttt |
46215447 |
T |
|
| Q |
516 |
ctttgcacaaagaaactaagcccttcagaattagtagttttttctaaaaattcaaacagaaattgcaaacacactcttgctagtgctagtgacttgaact |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46215448 |
ctttgcacaaagaaactaagcccttcagaattagtagttttttctaaaaattcaaacagaaattgcaaacacactcttgctagtgctagtgacttgaact |
46215547 |
T |
|
| Q |
616 |
atcctgctatatcagttgtgattccagcaaaacc |
649 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
46215548 |
atcctgctatatcagttgtgattccagcaaaacc |
46215581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 237 - 555
Target Start/End: Complemental strand, 366841 - 366516
Alignment:
| Q |
237 |
aagtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaacatcctgaatggagtccagctgcta |
336 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||| |
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|
| T |
366841 |
aagtttaacatgttttccggaacttcaatgtcatgtcctcatgtaagtggaatcgcgaaaatgatcaaagctaaacataccgaatggagtccagctacta |
366742 |
T |
|
| Q |
337 |
taaaatcagcaatcatgacaacagct---tatgttcatgataatactattaaacctcttagagatgcttcttctgctgaattttcaactccttatgatca |
433 |
Q |
| |
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||||||| ||||||||||||| || |||||||||||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
366741 |
taaaatctttaatcatgacaacaacttactatgttcatgataatattattaaacctctcggagttgtttcttctgctgaattttcaactccttatgatca |
366642 |
T |
|
| Q |
434 |
tggtgctggcc----atattaatcctagaaaagctcttgatccaggtttattatatgatatcgaacctcaagattactttgagtttctttgcacaaagaa |
529 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||| | |||||| ||||||||||||| |
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|
| T |
366641 |
tggtgctggacctatttattaaacctagaaaagctcttgatccaggtttagtatatgatattaaaccacaagattacatcgagtttatttgcacaaagaa |
366542 |
T |
|
| Q |
530 |
actaagcccttcagaattagtagttt |
555 |
Q |
| |
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| |||| ||||||||| ||| ||||| |
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|
| T |
366541 |
agtaagtccttcagaaataggagttt |
366516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 18202973 - 18203065
Alignment:
| Q |
157 |
tagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaatagatcatagaagggttaagtttaacatac |
249 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| || | |||||| ||| | ||||||||||||| |
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|
| T |
18202973 |
tagcacctggtgtgaacattcttgcagtttggagtggacttaatggtccatcaagtttactaacatatcataaaagaatgaagtttaacatac |
18203065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 7523920 - 7523866
Alignment:
| Q |
238 |
agtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgc |
292 |
Q |
| |
|
||||||||||| |||| || ||||| ||||||||||||||||| ||||||||||| |
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|
| T |
7523920 |
agtttaacataatttcaggtacttctatgtcatgtcctcatgttagtggaatcgc |
7523866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 3215811 - 3215775
Alignment:
| Q |
330 |
gctgctataaaatcagcaatcatgacaacagcttatg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
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| T |
3215811 |
gctgctataaaatcagcaatcatgacaactgcttatg |
3215775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 3219317 - 3219281
Alignment:
| Q |
330 |
gctgctataaaatcagcaatcatgacaacagcttatg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3219317 |
gctgctataaaatcagcaatcatgacaactgcttatg |
3219281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 3207879 - 3207847
Alignment:
| Q |
326 |
tccagctgctataaaatcagcaatcatgacaac |
358 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
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|
| T |
3207879 |
tccagctgctataaaatccgcaatcatgacaac |
3207847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 23041957 - 23042005
Alignment:
| Q |
312 |
catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag |
360 |
Q |
| |
|
|||||||| ||||||||||||| ||| || |||||||||||||| |||| |
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|
| T |
23041957 |
catcctgattggagtccagctgttatcaagtcagcaatcatgactacag |
23042005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 42742451 - 42742403
Alignment:
| Q |
312 |
catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag |
360 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
42742451 |
catcctgattggagtccagctgctatcaagtcagcaatcatgactacag |
42742403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 42751810 - 42751762
Alignment:
| Q |
312 |
catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag |
360 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
42751810 |
catcctgattggagtccagctgctatcaagtcagcaatcatgactacag |
42751762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 42761272 - 42761224
Alignment:
| Q |
312 |
catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag |
360 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
42761272 |
catcctgattggagtccagctgctatcaagtcagcaatcatgactacag |
42761224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 42736248 - 42736296
Alignment:
| Q |
312 |
catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag |
360 |
Q |
| |
|
|||||||| ||||||||||| ||||| || |||||||||||||| |||| |
|
|
| T |
42736248 |
catcctgattggagtccagcagctatcaagtcagcaatcatgaccacag |
42736296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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