View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6520_low_2 (Length: 605)
Name: NF6520_low_2
Description: NF6520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6520_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 104 - 378
Target Start/End: Complemental strand, 19388440 - 19388166
Alignment:
| Q |
104 |
tatatacgagatcagaagctttgacaagagtttcaagacgagaatcgttcttgatattcatctgatgaaactcaatacggttagcccaaggatgagactt |
203 |
Q |
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| T |
19388440 |
tatatacgagatcagaagctttgacaagagtttcaagacgagaatcgttcttgatattcatctgatgaaactcaatacggttagcccaaggatgagactt |
19388341 |
T |
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| Q |
204 |
atcaaggagatgattgactttctcagaggagacatcaatgactatggctttgtgggaagtttcggacatgagcttttcggtgaggtgtgatccgatgaac |
303 |
Q |
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| T |
19388340 |
atcaaggagatgattgactttctcagaggagacatcaatgactatggctttgtgggaagtttcggacatgagcttttcggtgaggtgtgatccgatgaat |
19388241 |
T |
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| Q |
304 |
cctccaccgccgatcaagcatattgagatcggtgcgattggctttccgtcaaggttcacttgatccatatctttt |
378 |
Q |
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| T |
19388240 |
cctccaccgccgatcaagcatattgagatcggcacaattggctttccgtcaaggttcactcgatccatatctttt |
19388166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 466 - 591
Target Start/End: Complemental strand, 19388077 - 19387952
Alignment:
| Q |
466 |
caagatggtgattgaagaaggaactgagaatacggtggtattgatgtaaattcgaccacaatttcagttatggacgttgcttgttgtgattacttgcatt |
565 |
Q |
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| T |
19388077 |
caagatggtgattgaagaaggaactgagaatacggtggtattgatgtaaattcgaccacaatttcagttatggacgttgcttgttgtgattacttgcatt |
19387978 |
T |
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| Q |
566 |
gcatgccatatatggttattattact |
591 |
Q |
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| T |
19387977 |
gcatgccatatatggttattattact |
19387952 |
T |
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