View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6520_low_3 (Length: 375)
Name: NF6520_low_3
Description: NF6520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6520_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 27638681 - 27638464
Alignment:
| Q |
17 |
catgtatgcctttgaccaccactaacaagtagtatnnnnnnnntcactccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtt |
116 |
Q |
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| T |
27638681 |
catgtatgcctttgaccaccactaacatgtagtatgaaaaaaaccactccctactacgaagaaccatccttaaaacatttagatttaatcaaatcttgtt |
27638582 |
T |
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| Q |
117 |
tatgaatttgtttcatcaaagttggttctgaaataatggccatgcaaccaccctctcacggaaataatgtatttcctttctatgtcaatgacctttactt |
216 |
Q |
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| T |
27638581 |
tatgaatttgtttcatcaaggttggttctgaaataatggccatgcaaccaccctctcacggaaataatgtatttcctttctatgtcaatgacctttactt |
27638482 |
T |
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| Q |
217 |
aggtggactcgtagagtt |
234 |
Q |
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|||||||||||||||||| |
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| T |
27638481 |
aggtggactcgtagagtt |
27638464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 37354822 - 37354648
Alignment:
| Q |
60 |
tcactccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccat |
159 |
Q |
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| T |
37354822 |
tcactccctactatgaagaaccacccttaaaacattt-gattttatcaaatctaatttatgcatttgtttcttcaaggttggctctgaaatagtggccat |
37354724 |
T |
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| Q |
160 |
gcaaccaccctctcacggaaa-taatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagtt |
234 |
Q |
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| T |
37354723 |
gcaatcacccactcacggaaaataatgtatttcctttttatgtcaatgacctttacttaggtggactcgcagagtt |
37354648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 37366796 - 37366622
Alignment:
| Q |
60 |
tcactccctactatgaagaaccatccttaaaacatttagatttaatcaaatcttgtttatgaatttgtttcatcaaagttggttctgaaataatggccat |
159 |
Q |
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| T |
37366796 |
tcactccctactatgaagaaccacccttaaaacattt-gattttatcaaatctaatttatgcatttgtttcttcaaggttggctctgaaatagtggccat |
37366698 |
T |
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| Q |
160 |
gcaaccaccctctcacggaaa-taatgtatttcctttctatgtcaatgacctttacttaggtggactcgtagagtt |
234 |
Q |
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| T |
37366697 |
gcaatcacccactcacggaaaataatgtatttcctttttatgtcaatgacctttacttaggtggactcgcagagtt |
37366622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 27638406 - 27638331
Alignment:
| Q |
292 |
gtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcctttgct |
367 |
Q |
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| T |
27638406 |
gtggcaggggaatgttgttcccattatcaattctcatgttcatgcttcaaacgtcttaatttcccctgcccttgct |
27638331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 37354590 - 37354525
Alignment:
| Q |
292 |
gtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccc |
357 |
Q |
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| T |
37354590 |
gtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttccc |
37354525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 37366564 - 37366499
Alignment:
| Q |
292 |
gtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccc |
357 |
Q |
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| T |
37366564 |
gtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttccc |
37366499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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