View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6520_low_5 (Length: 254)
Name: NF6520_low_5
Description: NF6520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6520_low_5 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 3215514 - 3215748
Alignment:
| Q |
20 |
tagaaaatgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215514 |
tagaaaatgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgta |
3215613 |
T |
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| Q |
120 |
attcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3215614 |
attcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtg |
3215713 |
T |
|
| Q |
220 |
gcaaataaatcagctggtttaagtctttggtccaa |
254 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3215714 |
gcaaataaatcagctggtttaagtctttggtccaa |
3215748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 28 - 254
Target Start/End: Original strand, 3207586 - 3207812
Alignment:
| Q |
28 |
gatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgtaattcaaac |
127 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||| |
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| T |
3207586 |
gatggataattaagctgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaaaataactccaacttgtctatcagtataattcaaac |
3207685 |
T |
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| Q |
128 |
cacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggcaaataa |
227 |
Q |
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| T |
3207686 |
cacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcatttgcttttgaagggttgacatgtccagcaccagtggcaaatac |
3207785 |
T |
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| Q |
228 |
atcagctggtttaagtctttggtccaa |
254 |
Q |
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|||||||||| || |||||||||||| |
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| T |
3207786 |
atcagctggtagaattctttggtccaa |
3207812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 3201604 - 3201838
Alignment:
| Q |
20 |
tagaaaatgatggataattaagctgtgcttgtggtatgctctttatatcagagcatttcactttctgttgcaaaataattccaacatgtctatcagtgta |
119 |
Q |
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|||||| |||||| |||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||| ||||||| || |
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| T |
3201604 |
tagaaattgatgggtaattaagttgtgcttgtggtatgctctttacatcagagcatttcactttttgttgcaatataattccaacttgtatatcagtata |
3201703 |
T |
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| Q |
120 |
attcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtg |
219 |
Q |
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| T |
3201704 |
attcaaaccacacaaataaggaacataatcatttgtttcaatatcataaacaagtcccggatcgtttgcttttgaagggttaacatgtccagcaccagtg |
3201803 |
T |
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| Q |
220 |
gcaaataaatcagctggtttaagtctttggtccaa |
254 |
Q |
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||||||| |||||||||| ||| ||||||||||| |
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| T |
3201804 |
gcaaatacatcagctggtagaagcctttggtccaa |
3201838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 101 - 251
Target Start/End: Original strand, 3219101 - 3219251
Alignment:
| Q |
101 |
caacatgtctatcagtgtaattcaaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggtt |
200 |
Q |
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|||| ||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |||| |
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| T |
3219101 |
caacttgtatatcagtataattcaaaccacccaagtaaggaacaatgtcatttggttcaatgtcataaacaagtcctggatcgtttgctttcaaatggtt |
3219200 |
T |
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| Q |
201 |
gacatgtccagcaccagtggcaaataaatcagctggtttaagtctttggtc |
251 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3219201 |
gacatatccagcaccagtggcaaataaatcagctggtttaagcctttggtc |
3219251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 3220537 - 3220647
Alignment:
| Q |
123 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
222 |
Q |
| |
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||||||||||| |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3220537 |
caaaccacacagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3220636 |
T |
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| Q |
223 |
aataaatcagc |
233 |
Q |
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|| | |||||| |
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| T |
3220637 |
aaaatatcagc |
3220647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 3179271 - 3179140
Alignment:
| Q |
123 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
222 |
Q |
| |
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||||||||||| |||||||| ||||| | ||||| ||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3179271 |
caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3179172 |
T |
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| Q |
223 |
aataaatcagctggtttaagtctttggtccaa |
254 |
Q |
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| T |
3179171 |
aaaacatcagcaggtgaaagtctttgatccaa |
3179140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 3230770 - 3230865
Alignment:
| Q |
123 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt |
218 |
Q |
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||||||||| | |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| |||| || |||||||| |||||||| |
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| T |
3230770 |
caaaccacaaagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaaaaggattaacatgtcctgcaccagt |
3230865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 3239569 - 3239700
Alignment:
| Q |
123 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagtggca |
222 |
Q |
| |
|
||||||||||| |||||||| ||||| | ||||| ||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| ||| |
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| T |
3239569 |
caaaccacacagataaggaacgtaatcttctggttgaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagtagca |
3239668 |
T |
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| Q |
223 |
aataaatcagctggtttaagtctttggtccaa |
254 |
Q |
| |
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|| | |||||| ||| ||||||||| ||||| |
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| T |
3239669 |
aaaacatcagcaggtgaaagtctttgatccaa |
3239700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 3225522 - 3225617
Alignment:
| Q |
123 |
caaaccacacaagtaaggaacataatcatttggttcaatatcataaacaagtcctggatcgtttgctttcgaagggttgacatgtccagcaccagt |
218 |
Q |
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||||||||| | |||||||||||||| | ||||||||||||||||||||| || ||||| || ||||| ||| || |||||||| |||||||| |
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| T |
3225522 |
caaaccacatagataaggaacataatcttctggttcaatatcataaacaagaccaggatcattagctttaacaggattaacatgtcctgcaccagt |
3225617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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